BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0214200 Os01g0214200|AK061229
(238 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G45920.1 | chr5:18622822-18624677 FORWARD LENGTH=242 274 4e-74
AT5G62930.1 | chr5:25254912-25256357 FORWARD LENGTH=243 222 1e-58
AT2G38180.1 | chr2:15997187-15998751 FORWARD LENGTH=313 155 2e-38
AT3G11210.1 | chr3:3511101-3512899 REVERSE LENGTH=257 145 2e-35
>AT5G45920.1 | chr5:18622822-18624677 FORWARD LENGTH=242
Length = 241
Score = 274 bits (700), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 137/239 (57%), Positives = 168/239 (70%), Gaps = 3/239 (1%)
Query: 1 MRPRLVLFGDSITELSFADGGWGAALADHFARKADVVLRGFSGYNTRWALRVLXXX--XX 58
MR ++ LFGDSITE SF+DGGWGA+LAD RKAD+VLRG+SGYNTRWAL+V+
Sbjct: 2 MRRKIFLFGDSITEESFSDGGWGASLADLLRRKADMVLRGYSGYNTRWALKVVERVFPVA 61
Query: 59 XXXXXXXXXXVTVFFGANDASLPERKQVHQHVPLDEYQSNLRSICAYFKEQWPSTKIILI 118
VTVFFGANDA LPER QHVPL EY+ NLRSI ++ K +WP T IILI
Sbjct: 62 EEDGGDSPAAVTVFFGANDACLPERCSGFQHVPLHEYKQNLRSIVSFLKNRWPQTAIILI 121
Query: 119 TPPPIYEPARIRDMYGEDDPSKLPERTNEAAGTYAQACLTVAKELNHPVIDIWTKMQQFP 178
TPPPI E AR+R Y E+ + LPERTNE AG YA+AC+ VA+E V D+W+KMQQ P
Sbjct: 122 TPPPIDEEARLRYPYIEN-TTGLPERTNEVAGLYAKACIAVAEECQISVTDLWSKMQQIP 180
Query: 179 DWQTSALCDGLHFTPLGNKILFDCVLETLESIGFSQGSLQPDLPLFHDIDPKDPLKAFE 237
+WQT L DGLH + +GNK++F+ V + L+ G L DLPL D+DPKDPLK+F+
Sbjct: 181 NWQTECLWDGLHLSRVGNKVVFEEVAKKLKEEGIGAEDLAVDLPLIEDVDPKDPLKSFD 239
>AT5G62930.1 | chr5:25254912-25256357 FORWARD LENGTH=243
Length = 242
Score = 222 bits (566), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 117/240 (48%), Positives = 145/240 (60%), Gaps = 5/240 (2%)
Query: 1 MRPRLVLFGDSITELSFADGGWGAALADHFARKADVVLRGFSGYNTRWALRVLXXXXXXX 60
MRP +VLFGDSIT SF GGWG+ALAD ++RKADVV+RG+ GYNTRWAL L
Sbjct: 1 MRPEIVLFGDSITAQSFRSGGWGSALADAYSRKADVVVRGYGGYNTRWAL-FLLHHIFPL 59
Query: 61 XXXXXXXXVTVFFGANDASLPERKQVHQHVPLDEYQSNLRSICAYFKEQWPSTKIILITP 120
T+FFGANDA+L R QHVP++EY N+R I + K+ P+ I+LITP
Sbjct: 60 GSSSPPVATTIFFGANDAALKGRTSDRQHVPVEEYTDNVRKIVQHLKKCSPTMLIVLITP 119
Query: 121 PPIYEPAR---IRDMYGEDDPSKLPERTNEAAGTYAQACLTVAKELNHPVIDIWTKMQQF 177
PPI E R +YGE K PERTNE G YAQ C+ +A+EL +++W+KMQ+
Sbjct: 120 PPIDEAGRQSYAESIYGEK-AMKEPERTNETTGVYAQHCVALAEELGLRCVNLWSKMQET 178
Query: 178 PDWQTSALCDGLHFTPLGNKILFDCVLETLESIGFSQGSLQPDLPLFHDIDPKDPLKAFE 237
DWQ L DGLH TP GN ++FD V S + D P ID K+P KAFE
Sbjct: 179 NDWQKKYLSDGLHLTPEGNGVVFDEVSRVFREAWLSPEEMPFDFPHHSHIDGKNPSKAFE 238
>AT2G38180.1 | chr2:15997187-15998751 FORWARD LENGTH=313
Length = 312
Score = 155 bits (391), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 81/207 (39%), Positives = 122/207 (58%), Gaps = 6/207 (2%)
Query: 1 MRPRLVLFGDSITELSFADGGWGAALADHFARKADVVLRGFSGYNTRWALRVLXXXXXXX 60
+RP++VLFG SI + SF D GWGA LAD ++R AD++LRG++G+N+R+AL+VL
Sbjct: 5 VRPQIVLFGSSIVQYSFTDRGWGATLADLYSRTADIILRGYAGWNSRFALKVL-HQVFPK 63
Query: 61 XXXXXXXXVTVFFGANDASLPERKQVHQHVPLDEYQSNLRSICAYFKEQWPSTKIILITP 120
V V+FG ND++ P HVPL E+ N+R I + T++I +TP
Sbjct: 64 DAVIQPSLVIVYFGGNDSTHPHPSGHGPHVPLSEFIENMRKIGEHLLSLSDKTRVIFLTP 123
Query: 121 PPIYEPARIRDMYGEDDPSKLPERTNEAAGTYAQACLTVAKELNHPVIDIWTKMQQFPDW 180
PP+ E +I ++G+ + R+NE YA+ L + +E+N IDIWT +QQ DW
Sbjct: 124 PPMNE-KQIEIVFGD----AIKGRSNELCRPYAEELLNLCREINVKGIDIWTAIQQQDDW 178
Query: 181 QTSALCDGLHFTPLGNKILFDCVLETL 207
S DG+HFT ++I+ +L+ L
Sbjct: 179 LNSCFTDGIHFTAKASEIVVKEILKVL 205
>AT3G11210.1 | chr3:3511101-3512899 REVERSE LENGTH=257
Length = 256
Score = 145 bits (366), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 82/237 (34%), Positives = 131/237 (55%), Gaps = 9/237 (3%)
Query: 2 RPRLVLFGDSITELSFADGGWGAALADHFARKADVVLRGFSGYNTRWALRVLXXXXXXXX 61
RP++VLFG SI ++SF GGWGA L++ +ARKAD++LRG+ G+N+ AL V+
Sbjct: 6 RPQIVLFGSSIVQMSFGHGGWGAILSEVYARKADIILRGYYGWNSSRALEVV-DQVFPKD 64
Query: 62 XXXXXXXVTVFFGANDASLPERKQVHQHVPLDEYQSNLRSICAYFKEQWPSTKIILITPP 121
V V+FG ND+ P + HVPL EY N++ I + + T+II ++ P
Sbjct: 65 AAVQPSLVIVYFGGNDSMAPHSSGLGPHVPLTEYVDNMKKIALHLQSLSDFTRIIFLSSP 124
Query: 122 PIYEPARIRDMYGEDDPSKLPE--RTNEAAGTYAQACLTVAKELNHPVIDIWTKMQQFPD 179
P+ E A++R ++ L E RTN+ TY+ AC+ + +EL V+D+++ Q+ D
Sbjct: 125 PVDE-AKVR----QNQSPYLSEVIRTNDLCKTYSDACVELCQELGLEVVDLFSTFQKADD 179
Query: 180 WQTSALCDGLHFTPLGNKILFDCVLETLESIGFSQGSLQPDLPL-FHDIDPKDPLKA 235
W+T DG+H + G+KI+ +L ++ + +P F D P D + A
Sbjct: 180 WKTVCFTDGIHLSAQGSKIVAGEILRVVKEAEWHPSLHWKSMPTEFADDSPYDLVSA 236
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.322 0.139 0.440
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,302,119
Number of extensions: 210615
Number of successful extensions: 482
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 474
Number of HSP's successfully gapped: 4
Length of query: 238
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 142
Effective length of database: 8,474,633
Effective search space: 1203397886
Effective search space used: 1203397886
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 110 (47.0 bits)