BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0210800 Os01g0210800|AK069335
         (302 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G18270.1  | chr4:10099364-10101897 REVERSE LENGTH=481          208   3e-54

>AT4G18270.1 | chr4:10099364-10101897 REVERSE LENGTH=481
          Length = 480

 Score =  208 bits (530), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 134/290 (46%), Positives = 177/290 (61%), Gaps = 2/290 (0%)

Query: 15  PFYRKPT-PAMGGLFFVPIGIFVA-RRQVGSSTGVNGAAIITLIFAMVGFLDDISNLVMD 72
           P  R+PT P MGGLFFVPIG+ VA      SS  V GAA  T+ FA +G +DD  +L  +
Sbjct: 191 PHNRRPTIPTMGGLFFVPIGVVVAIALNKVSSIEVLGAAAATVAFAAIGLIDDSLSLYSE 250

Query: 73  CNRKIPHWMRLFVQIVAGIYLSIWLSSTNISTPYNTKFLVPLPPPLGLAFIGKIYLVLAA 132
            N  +   ++L ++   G   + WL + ++S+PY  K LVPLP PLGL F+GK+YL+L +
Sbjct: 251 NNNGLSAKIQLLLEAAVGTCFAFWLETASLSSPYGMKMLVPLPSPLGLVFLGKLYLLLTS 310

Query: 133 ICSLSMGTGVTLVDHLDXXXXXXXXXXXXXXXXXXXPICSEMSVFGASMSGACTGFLFHN 192
              +SMG  V   D LD                   PICS++SVFGASM+GAC GFL HN
Sbjct: 311 FYFVSMGNLVKATDGLDGLAGGIAALCFVAMAIAVLPICSDLSVFGASMAGACFGFLLHN 370

Query: 193 RYRASIVMGRVGSFALGGAIATIAACSGMFIPMFIACSIFLLELLLVIFQVPFQMAKKHF 252
           RYRAS+ MG  GS ALGGA+A +AACSGMF P+FI+  + +LE   VI QV +    K  
Sbjct: 371 RYRASVSMGDTGSLALGGALAAMAACSGMFFPLFISSGVAVLEASSVIIQVVYYSTTKRL 430

Query: 253 LGTNRYPLRILPSYYFLKSWGIKEPYIVAGAYIISCLLTAFAGYLGLVSA 302
            G  R   + +P ++ L+  G+KEP IV  AY+IS LL+  A Y+GL+SA
Sbjct: 431 KGKGRRIFKTIPFHHHLRLNGLKEPMIVTMAYVISSLLSLSAAYIGLISA 480



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.331    0.145    0.456 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,019,838
Number of extensions: 227572
Number of successful extensions: 615
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 613
Number of HSP's successfully gapped: 1
Length of query: 302
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 204
Effective length of database: 8,419,801
Effective search space: 1717639404
Effective search space used: 1717639404
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 111 (47.4 bits)