BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0209000 Os01g0209000|AK103701
(572 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G16900.1 | chr1:5779262-5782303 REVERSE LENGTH=571 737 0.0
>AT1G16900.1 | chr1:5779262-5782303 REVERSE LENGTH=571
Length = 570
Score = 737 bits (1902), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/525 (66%), Positives = 418/525 (79%), Gaps = 1/525 (0%)
Query: 44 WFLPFLALGLLRHMSASSNLIHDCDEVFNYWEPLHFLLYRSGFQTWEYSSNFALRSYLYL 103
WFLPF+AL LR+MSA+SN+IHDCDEVFNYWEPLH++LY+SGFQTWEYSSNFALRSYLY+
Sbjct: 46 WFLPFIALCYLRYMSATSNIIHDCDEVFNYWEPLHYILYKSGFQTWEYSSNFALRSYLYI 105
Query: 104 FIHALVAGPASMIFGEHKVRVFYSVRIFLGLISTITETVLVVALSRKYGKRLACYVLAML 163
H L PAS FG+ KVRVFY+VR+FLGL+S +++TVLVVALSRKYGKR+A Y +AML
Sbjct: 106 LFHELAGRPASWWFGDDKVRVFYAVRLFLGLVSAVSDTVLVVALSRKYGKRIATYAVAML 165
Query: 164 CLTSGCFFASTSFLPSSFSMYAVTLSSALFLLENYXXXXXXXXXXXILGWPFSILVFLPI 223
CLTSGCFFASTSFLPSSFSMYA++LSS L L E Y ILGWPFSIL FLP+
Sbjct: 166 CLTSGCFFASTSFLPSSFSMYAISLSSGLLLFEKYAMAVAVSVVGVILGWPFSILAFLPV 225
Query: 224 TVYSLIRGSFRRVFLSGFLTSMFLLVLSVIADYYCYGKWTASVFNLLKYNVFGGGESHLY 283
+YSL++ F++ F++G +T++FLL +S++ DYY Y +WT+SV NLL YNV GGGESHLY
Sbjct: 226 VIYSLVK-RFKQAFIAGAVTTIFLLGVSLLVDYYYYKRWTSSVLNLLIYNVLGGGESHLY 284
Query: 284 GTEGPSXXXXXXXXXXXXXXXXXXXXXXXVPFARKKYVPDLLIVVSPVYIWLAFMSLQAH 343
GTEG P R+KY LL+V+SP+YIWLAFMSLQ H
Sbjct: 285 GTEGALFYIRNGFNNFNFCFILAMLFVAIYPVIRRKYDRALLVVISPMYIWLAFMSLQPH 344
Query: 344 KEERFLYPIYPLICVAAAAVIDTFPDFFHDKYSSEQSIFEKIAKGLRPLILGFILCASHS 403
KEERFLYPIYPLICV+A+AVI+ P+ F +KYSS +S+ I K +RP+ILG ILCASHS
Sbjct: 345 KEERFLYPIYPLICVSASAVIENIPELFREKYSSRESLLVTITKYMRPVILGCILCASHS 404
Query: 404 RTFSMLNGYGAPIQIYQHLEHHEDTGPGSVLCVGSEWHRYPSSFFIPSYISEVWWIDDGF 463
RTF+++NGY AP+++Y+ LEHH+D GPGSVLCVGSEWHRYPSSFF+P YISEV WIDDGF
Sbjct: 405 RTFALINGYSAPLEVYKLLEHHDDAGPGSVLCVGSEWHRYPSSFFVPHYISEVRWIDDGF 464
Query: 464 RGLLPFPFNETLGGTTAAPSYFNDKNKASDEQYLKDIGACSLLVELDLRRPYPSRGSDLS 523
RGLLPFPFN TLGGT+A+P YFN+KN+AS+EQYLK+I C+ L+EL L RPY RGSDLS
Sbjct: 465 RGLLPFPFNNTLGGTSASPPYFNNKNQASEEQYLKNIETCTFLIELQLSRPYQYRGSDLS 524
Query: 524 TWETLAALPFLDRELSPALYRSFFIPHRWQQNNVFGLYKLLRRLP 568
TWE +A LP+LDRELSPA YRSFFIPH WQ+ NVFG Y LRR+P
Sbjct: 525 TWEAIAVLPYLDRELSPAKYRSFFIPHMWQEKNVFGKYVALRRVP 569
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.327 0.142 0.452
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 11,709,430
Number of extensions: 485402
Number of successful extensions: 1149
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1147
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 11,106,569
Length adjustment: 104
Effective length of query: 468
Effective length of database: 8,255,305
Effective search space: 3863482740
Effective search space used: 3863482740
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 114 (48.5 bits)