BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0207400 Os01g0207400|AK109337
(255 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G14920.1 | chr3:5018275-5020104 FORWARD LENGTH=610 150 6e-37
AT5G05480.1 | chr5:1622338-1624164 REVERSE LENGTH=609 94 1e-19
>AT3G14920.1 | chr3:5018275-5020104 FORWARD LENGTH=610
Length = 609
Score = 150 bits (379), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 89/255 (34%), Positives = 136/255 (53%), Gaps = 10/255 (3%)
Query: 1 YDVELTPFLGKLLDGKEHELGFAVTNAQKSWYVDANLHLWLDPKSVATSGGLVAYDAPKL 60
YD+E+TPFLG LLDGK H++GF+VTNA WY+DANLHLWLD + G ++ + L
Sbjct: 337 YDIEITPFLGSLLDGKTHKVGFSVTNALNVWYIDANLHLWLDQEKEIVEGKVLDFSRSSL 396
Query: 61 TGKIVSNSSD--GIDGQYDATASRNITATGWVRSSRGNITTTFTQRLTFVHTNVVTSQGS 118
+S+ SD G++G + A R+IT+ G V+SS G+I T Q ++ + V+ G+
Sbjct: 397 E---ISSVSDFKGLNGNFTTKAKRSITSVGLVKSSHGDIITNANQEFSYENKMVLGKDGN 453
Query: 119 SQAINQTTEARTEVVTGDGA---HALQLHQSFPLYIFLGGDGSGTSSQRLMRRVAIGFDE 175
Q I+Q +A + + +A + +SFP Y+ ++ + V++ F+E
Sbjct: 454 LQIIDQLIQADDRIHAKRASREIYAAKSIKSFPFYLDSDTLEQQNNTYLAVANVSMAFNE 513
Query: 176 TRXXXXX-XXXXXXXTLHNEQTAAAEVVLRDDQVVGASWRMHQVYEYGGSDGGCYSRNVS 234
R L N+Q +V++++ VV QVY Y GSD CY RN+S
Sbjct: 514 ERSESDKGLMRTFKSKLENKQEGQGVMVVKNNLVVSGYGSTQQVYNYVGSD-QCYFRNIS 572
Query: 235 SVGYDVLFDHNEESC 249
S Y +L+D E C
Sbjct: 573 SYNYTILYDKVESVC 587
>AT5G05480.1 | chr5:1622338-1624164 REVERSE LENGTH=609
Length = 608
Score = 93.6 bits (231), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 72/240 (30%), Positives = 106/240 (44%), Gaps = 14/240 (5%)
Query: 1 YDVELTPFLGKLLDGKEHELGFAVTNAQKSWYVDANLHLWLDPKSVATSGGLVAYDAPKL 60
YD++LTPFLG LLDGK HE F V + W VDANLHLWLD S G YD+P
Sbjct: 336 YDMDLTPFLGLLLDGKSHEFAFGVNDGISYWLVDANLHLWLDHGSSNVEAGSRLYDSPS- 394
Query: 61 TGKIVSNSSDGIDGQYDATASRNITATGWVRSSRGNITTTFTQRLTFVHTNVVTSQGSSQ 120
+ + +DG + A + GWVRSS+GN+TT G+ +
Sbjct: 395 RHMMRQEQLEQLDGSFKVEAEVSSEYDGWVRSSKGNLTTMVKSMFKVDSLVRFEKNGTYK 454
Query: 121 AINQ--TTEARTEVVTGDGAHALQ-LHQ-SFPLYIF---LGGDGSGTSSQRLMRRVAIGF 173
+ Q TE EV + G + +HQ ++PL + L G + + L+ V+
Sbjct: 455 RVEQRVKTERIVEVTSESGKPVNRVVHQRTYPLTVITSTLRGLTNDKDTYMLVTNVSHAL 514
Query: 174 DETRXXXXXXXXXXXXTLHNEQTAAAEVVLRDDQVVGASWRMHQVYEYGGSDGGCYSRNV 233
+ET +++ Q + + + D V+ Q Y + CYSR +
Sbjct: 515 NETHSDGEALIQ-----VYSRQDSEGWMEVEDHNVLAGEASTKQSLSY-IDEFSCYSRTI 568
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.315 0.131 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,186,170
Number of extensions: 193296
Number of successful extensions: 453
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 449
Number of HSP's successfully gapped: 2
Length of query: 255
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 159
Effective length of database: 8,474,633
Effective search space: 1347466647
Effective search space used: 1347466647
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 110 (47.0 bits)