BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0203000 Os01g0203000|AK067471
(365 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G78700.1 | chr1:29599854-29601539 FORWARD LENGTH=326 251 3e-67
AT4G18890.1 | chr4:10352774-10355259 FORWARD LENGTH=285 197 5e-51
AT1G75080.1 | chr1:28185709-28187063 FORWARD LENGTH=337 113 1e-25
AT1G19350.3 | chr1:6688680-6690165 FORWARD LENGTH=358 111 7e-25
AT3G50750.1 | chr3:18862147-18863062 REVERSE LENGTH=277 100 8e-22
AT4G36780.1 | chr4:17332989-17334212 REVERSE LENGTH=266 96 4e-20
AT5G45300.1 | chr5:18353636-18356696 FORWARD LENGTH=690 57 2e-08
AT2G45880.1 | chr2:18878674-18881824 REVERSE LENGTH=692 51 7e-07
>AT1G78700.1 | chr1:29599854-29601539 FORWARD LENGTH=326
Length = 325
Score = 251 bits (642), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 166/341 (48%), Positives = 193/341 (56%), Gaps = 30/341 (8%)
Query: 31 RMPTWXXXXXXXXXXXXXXXXXXXXFAGLRAHGGYKLPKHCDNNEVLKALCNEAGWVVEP 90
RMPTW F GLR +G Y+LPKHCDNNEVLKALCNEAGW+VEP
Sbjct: 6 RMPTWRERENNKRRERRRRAIAAKIFTGLRMYGNYELPKHCDNNEVLKALCNEAGWIVEP 65
Query: 91 DGTTYRKG-YKPPERMEVIGCXXXXXXXXXXXXXXRXXXXXXXXXXXXXXXXXXXFLPHP 149
DGTTYRKG +P ERME+ G F
Sbjct: 66 DGTTYRKGCSRPVERMEIGGGSATASPCSSYQPSPCASYNPSPGSSNFMSPASSSFA--- 122
Query: 150 NNMANGVDGNPILPWLKTLSNSPSSKKHP--QLPPLL-IHGGSISAPVTPPLSSPTARTP 206
N+ +G DG ++PWLK LS + SS +LP L I GGSISAPVTPPLSSPTARTP
Sbjct: 123 -NLTSG-DGQSLIPWLKHLSTTSSSSASSSSRLPNYLYIPGGSISAPVTPPLSSPTARTP 180
Query: 207 RMKTDWDESNVQPTWTGSNSPCVVNSTPPSPGRTMLPDPAWLAGIQIXXXXXXXXXXXXX 266
RM TDW + N+ V+STPPSP R ++PD W +GIQ+
Sbjct: 181 RMNTDWQQ---------LNNSFFVSSTPPSPTRQIIPDSEWFSGIQLAQSVPASPTFSLV 231
Query: 267 XXNPFSVFKD---AILVGNNSSRMCTPGQSGTCSPAI-PGMAPHPDIHMMDAVS-DEFAF 321
NPF FK+ + G SRM TPGQSGTCSPAI PG D+ M +AV+ EFAF
Sbjct: 232 SQNPFG-FKEEAASAAGGGGGSRMWTPGQSGTCSPAIPPGADQTADVPMSEAVAPPEFAF 290
Query: 322 GSSTNGGHQAAGLVRAWEGERIHEDSGSDDLELTLGSSRTR 362
GS+TN GLV+AWEGERIHE+SGSDDLELTLG+S TR
Sbjct: 291 GSNTN------GLVKAWEGERIHEESGSDDLELTLGNSSTR 325
>AT4G18890.1 | chr4:10352774-10355259 FORWARD LENGTH=285
Length = 284
Score = 197 bits (502), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 134/334 (40%), Positives = 161/334 (48%), Gaps = 57/334 (17%)
Query: 31 RMPTWXXXXXXXXXXXXXXXXXXXXFAGLRAHGGYKLPKHCDNNEVLKALCNEAGWVVEP 90
R PTW FAGLR HG +KLPKHCDNNEVLKALCNEAGW VE
Sbjct: 6 RTPTWKERENNKRRERRRRAIAAKIFAGLRIHGNFKLPKHCDNNEVLKALCNEAGWTVED 65
Query: 91 DGTTYRKGYKPPERMEVIGCXXXXXXXXXXXXXXRXXXXXXXXXXXXXXXXXXXFLPHPN 150
DGTTYRKG KP +RM+++ R
Sbjct: 66 DGTTYRKGCKPMDRMDLMNGSTSASPCSSYQHSPRASYNPSPSSSSFPSPTNPF------ 119
Query: 151 NMANGVDGNPILPWLKTLS-NSPSSKKHPQLPPLLIHGGSISAPVTPPLSSPTARTPRMK 209
D N ++PWLK LS NSPS +LP HG SISAPVTPPL AR+P
Sbjct: 120 -----GDANSLIPWLKNLSSNSPS-----KLP--FFHGNSISAPVTPPL----ARSPTRD 163
Query: 210 TDWDESNVQPTWTGSNSPCVVNSTPPSPGRTMLPDPAWLAGIQIXXXXXXXXXXXXXXXN 269
+ +PD WL+G+Q N
Sbjct: 164 -----------------------------QVTIPDSGWLSGMQTPQSGPSSPTFSLVSRN 194
Query: 270 PFSVFKDAILVGNNSSRMCTPGQSGTCSPAIP-GMAPHPDIHMMDAVSDEFAFGSSTNGG 328
PF K+A +G+ +S M TPGQSG CSPAIP G+ + D+ M D ++ EFAFG +
Sbjct: 195 PF-FDKEAFKMGDCNSPMWTPGQSGNCSPAIPAGVDQNSDVPMADGMTAEFAFGCN---A 250
Query: 329 HQAAGLVRAWEGERIHEDSGSDDLELTLGSSRTR 362
A G+V+ WEGERIH + SDDLELTLG+SRTR
Sbjct: 251 MAANGMVKPWEGERIHGECVSDDLELTLGNSRTR 284
>AT1G75080.1 | chr1:28185709-28187063 FORWARD LENGTH=337
Length = 336
Score = 113 bits (283), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 109/339 (32%), Positives = 134/339 (39%), Gaps = 33/339 (9%)
Query: 31 RMPTWXXXXXXXXXXXXXXXXXXXXFAGLRAHGGYKLPKHCDNNEVLKALCNEAGWVVEP 90
R P+W + GLRA G Y LPKHCDNNEVLKALC EAGWVVE
Sbjct: 23 RKPSWRERENNRRRERRRRAVAAKIYTGLRAQGDYNLPKHCDNNEVLKALCVEAGWVVEE 82
Query: 91 DGTTYRKGYKPPERMEVIGCXXXXXXXXXXXXXXRXXXXXXXXXXXXXXXXXXXFLPHPN 150
DGTTYRKG KP E+ G F
Sbjct: 83 DGTTYRKGCKPLPG-EIAGTSSRVTPYSSQNQSPLSSAFQSPIPSYQVSPSSSSFPSPSR 141
Query: 151 NMANGVDGNPILPWLKTLSNSPSSKKHPQLPPLLIHGGSISAPVTPPLSSPTARTPRMKT 210
N + P+L+ PSS LP L I S S PVTPP+SSPT++ P+
Sbjct: 142 GEPNNNMSSTFFPFLRN-GGIPSS-----LPSLRI---SNSCPVTPPVSSPTSKNPKPLP 192
Query: 211 DWDESNVQ------PTWTGSNSPCVVNSTPPSPG-RTMLPDPAWLAGIQIXXXXXXXXXX 263
+W+ Q + N P S P SP R PA +
Sbjct: 193 NWESIAKQSMAIAKQSMASFNYPFYAVSAPASPTHRHQFHTPATIPECD------ESDSS 246
Query: 264 XXXXXNPFSVFKDAILVGNNSSRMCTPGQSGTCSPAIPGMAPHPDIHMMDAVSDEFAFGS 323
+ S K A ++S + T PA M+P+ S EF F +
Sbjct: 247 TVDSGHWISFQKFAQQQPFSASMVPTSPTFNLVKPAPQQMSPNTAAFQEIGQSSEFKFEN 306
Query: 324 STNGGHQAAGLVRAWEGERIHEDSGSDDLELTLGSSRTR 362
S V+ WEGERIH D G +DLELTLG+ + R
Sbjct: 307 SQ---------VKPWEGERIH-DVGMEDLELTLGNGKAR 335
>AT1G19350.3 | chr1:6688680-6690165 FORWARD LENGTH=358
Length = 357
Score = 111 bits (277), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 109/346 (31%), Positives = 140/346 (40%), Gaps = 45/346 (13%)
Query: 31 RMPTWXXXXXXXXXXXXXXXXXXXXFAGLRAHGGYKLPKHCDNNEVLKALCNEAGWVVEP 90
R P+W + GLRA G Y LPKHCDNNEVLKALC+EAGWVVE
Sbjct: 44 RKPSWRERENNRRRERRRRAVAAKIYTGLRAQGNYNLPKHCDNNEVLKALCSEAGWVVEE 103
Query: 91 DGTTYRKGYKPPERMEVIGCXXXXXXXXXXXXXXRXXXX-----XXXXXXXXXXXXXXXF 145
DGTTYRKG+K P ++ G
Sbjct: 104 DGTTYRKGHK-PLPGDMAGSSSRATPYSSHNQSPLSSTFDSPILSYQVSPSSSSFPSPSR 162
Query: 146 LPHPNNMANGVDGNPILPWLKTLSNSPSSKKHPQLPPLLIHGGSISAPVTPPLSSPTART 205
+ P+N++ I P+L+ PSS LPPL I S SAPVTPP+SSPT+R
Sbjct: 163 VGDPHNIST------IFPFLRN-GGIPSS-----LPPLRI---SNSAPVTPPVSSPTSRN 207
Query: 206 PRMKTDWDESNVQ-------PTWTGSNSPCVVNSTPPSPG-RTMLPDPAWLAGIQIXXXX 257
P+ W+ Q + T N P S P SP PA +
Sbjct: 208 PKPLPTWESFTKQSMSMAAKQSMTSLNYPFYAVSAPASPTHHRQFHAPATIPECD----- 262
Query: 258 XXXXXXXXXXXNPFSVFKDAILVGNNSSRMCTPGQSGTCSPAIPGMAPHPDIHMMDAVSD 317
+ S K A ++S + T PA ++P+ S
Sbjct: 263 -ESDSSTVDSGHWISFQKFAQQQPFSASMVPTSPTFNLVKPAPQQLSPNTAAIQEIGQSS 321
Query: 318 EFAFGSSTNGGHQAAGLVRAWEGERIHEDSGSDDLELTLGSSRTRA 363
EF F +S V+ WEGERIH D +DLELTLG+ + +
Sbjct: 322 EFKFENSQ---------VKPWEGERIH-DVAMEDLELTLGNGKAHS 357
>AT3G50750.1 | chr3:18862147-18863062 REVERSE LENGTH=277
Length = 276
Score = 100 bits (250), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 76/211 (36%), Positives = 93/211 (44%), Gaps = 32/211 (15%)
Query: 31 RMPTWXXXXXXXXXXXXXXXXXXXXFAGLRAHGGYKLPKHCDNNEVLKALCNEAGWVVEP 90
RMPTW F GLR+ G YKLPKHCDNNEVLKALC EAGW+V
Sbjct: 14 RMPTWKERENNKKRERRRRAIAAKIFTGLRSQGNYKLPKHCDNNEVLKALCLEAGWIVHE 73
Query: 91 DGTTYRKGYKPPERMEVIGCXXXXXXXXXXXXXXRXXXXXXXXXXXXXXXXXXXFLPHPN 150
DGTTYRKG +P E + C F P+ +
Sbjct: 74 DGTTYRKGSRPTE--TTVPCSSIQLSPQSSAFQS-PIPSYQASPSSSSYPSPTRFDPNQS 130
Query: 151 NMANGVDGNPILPWLKTLSNSPSSKKHPQLPPLLIHGGSISAPVTPPLSSPTARTPRMKT 210
+ ++P+L+ L++S + L PL I S SAPVTPP+SSP PR+
Sbjct: 131 STY-------LIPYLQNLASSGN------LAPLRI---SNSAPVTPPISSPRRSNPRL-- 172
Query: 211 DWDESNVQPTWTGSNSPCVVNSTPPSPGRTM 241
P W SN P S P SP R +
Sbjct: 173 --------PRWQSSNFPV---SAPSSPTRRL 192
>AT4G36780.1 | chr4:17332989-17334212 REVERSE LENGTH=266
Length = 265
Score = 95.5 bits (236), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 43/72 (59%), Positives = 47/72 (65%)
Query: 31 RMPTWXXXXXXXXXXXXXXXXXXXXFAGLRAHGGYKLPKHCDNNEVLKALCNEAGWVVEP 90
R PTW ++GLRA G YKLPKHCDNNEVLKALC EAGW+VE
Sbjct: 16 RTPTWKERENNKKRERRRRAITAKIYSGLRAQGNYKLPKHCDNNEVLKALCLEAGWIVED 75
Query: 91 DGTTYRKGYKPP 102
DGTTYRKG+KPP
Sbjct: 76 DGTTYRKGFKPP 87
>AT5G45300.1 | chr5:18353636-18356696 FORWARD LENGTH=690
Length = 689
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 31/46 (67%)
Query: 56 FAGLRAHGGYKLPKHCDNNEVLKALCNEAGWVVEPDGTTYRKGYKP 101
AGLR +G + LP D N+V+ AL EAGW VE DGTTYR+ +P
Sbjct: 111 LAGLRQYGNFPLPARADMNDVIAALAREAGWSVEADGTTYRQSQQP 156
>AT2G45880.1 | chr2:18878674-18881824 REVERSE LENGTH=692
Length = 691
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Query: 56 FAGLRAHGGYKLPKHCDNNEVLKALCNEAGWVVEPDGTTY---RKGYKP 101
GLR HG Y L D N+V+ AL EAGWVV PDGTT+ +G KP
Sbjct: 94 LGGLRRHGNYNLRVRADINDVIAALAREAGWVVLPDGTTFPSKSQGTKP 142
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.315 0.132 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,059,787
Number of extensions: 297636
Number of successful extensions: 900
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 895
Number of HSP's successfully gapped: 12
Length of query: 365
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 265
Effective length of database: 8,364,969
Effective search space: 2216716785
Effective search space used: 2216716785
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 112 (47.8 bits)