BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0200400 Os01g0200400|AK070272
         (262 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G11640.1  | chr5:3742008-3743703 FORWARD LENGTH=254            245   2e-65

>AT5G11640.1 | chr5:3742008-3743703 FORWARD LENGTH=254
          Length = 253

 Score =  245 bits (625), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 123/237 (51%), Positives = 164/237 (69%), Gaps = 4/237 (1%)

Query: 28  ISEPYYFLHLVAFFSYFAARSTVPSADDGLLLRREIQAVLTFLVLFVVKIVKEENWETCI 87
           +S+PYYFLH +AFFSY   RS+        L  REIQA L FL+   +K+V+EE WE  +
Sbjct: 16  VSDPYYFLHFMAFFSYLPIRSSAAPYTSHRLFDREIQAFLAFLMFSAIKMVREETWEAFV 75

Query: 88  ADSLLYAKGLLLAVTLVIDYWLTVSYLLGFVVIYAVAQQPPYDGLGHSNHLTPLQLEGLL 147
           ADSLLYAK  L+AV+L++DY + V + + F VIY +AQQP +  LG +  LTP+QLE LL
Sbjct: 76  ADSLLYAKIFLIAVSLIMDYRVAVWFSIIFSVIYLLAQQPAFSKLGTAKKLTPMQLEDLL 135

Query: 148 TEEPTTRFWLVEFRTSFSGTCIEASSVLPELSNIYSNKNISFGIIDLGHFPNAAAKFGIS 207
           ++  TT++WL+EF    S  C+ +S   PELS  YSN  +SFG +DLG FPN AAKFGIS
Sbjct: 136 SDGNTTKYWLIEFFACSSSKCVRSSRCFPELSITYSNNLLSFGTVDLGLFPNTAAKFGIS 195

Query: 208 M---WDHLPTYILFDKATEVARFPEIMNESKVFVPKITKKLLCQHFDLDRRLIEYLS 261
           +      LPTYILF+K  EV+RFP+   ++   +P ITKKLLCQHF+LDR L++Y++
Sbjct: 196 LAGGMSQLPTYILFEKGVEVSRFPDFYVDAAPSLP-ITKKLLCQHFELDRLLLDYIN 251



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.326    0.141    0.434 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,434,109
Number of extensions: 214860
Number of successful extensions: 628
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 626
Number of HSP's successfully gapped: 1
Length of query: 262
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 165
Effective length of database: 8,447,217
Effective search space: 1393790805
Effective search space used: 1393790805
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 111 (47.4 bits)