BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0200300 Os01g0200300|AK112091
(394 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G52150.2 | chr1:19409913-19413961 REVERSE LENGTH=838 461 e-130
AT4G32880.1 | chr4:15863587-15867822 REVERSE LENGTH=834 431 e-121
AT2G34710.1 | chr2:14639548-14643993 REVERSE LENGTH=853 388 e-108
AT5G60690.1 | chr5:24397734-24401933 FORWARD LENGTH=843 386 e-107
AT1G30490.1 | chr1:10796328-10800744 REVERSE LENGTH=842 382 e-106
>AT1G52150.2 | chr1:19409913-19413961 REVERSE LENGTH=838
Length = 837
Score = 461 bits (1187), Expect = e-130, Method: Compositional matrix adjust.
Identities = 232/397 (58%), Positives = 297/397 (74%), Gaps = 22/397 (5%)
Query: 1 MLLQDVSPPSLLQFLREHRSQWADSNLDAFFASTMKPNFCNLPMSRLGGFSGQVILPLAH 60
MLLQ+V P LL+FLREHRS+WAD+N+DA+ A+ +K C+ +R+GGF GQVILPLAH
Sbjct: 460 MLLQNVPPAILLRFLREHRSEWADNNIDAYLAAAVKVGPCS---ARVGGFGGQVILPLAH 516
Query: 61 TFEPEEFLEVIKL-GNASNYQDTLVHRDLFLLQMYNGVEESSAGTCSELIFAPIDASFSD 119
T E EEF+EVIKL G + +D +V RD+FLLQ+ +G++E++ GTC+ELIFAPIDASF+D
Sbjct: 517 TIEHEEFMEVIKLEGLGHSPEDAIVPRDIFLLQLCSGMDENAVGTCAELIFAPIDASFAD 576
Query: 120 DSPLLPSGFRIIPIDS-PLDTSSPNCTLDLASTLEAATPRXXXXXXXXXXXXXXXXXXXX 178
D+PLLPSGFRIIP+DS + SSPN TLDLAS LE +
Sbjct: 577 DAPLLPSGFRIIPLDSAKQEVSSPNRTLDLASALEIGS--------AGTKASTDQSGNST 628
Query: 179 XXXXVMTIAFQFAFDGHLQDSVAAMARQYMRNIISSVQRIAVALSSSRLVPPGAGAAAAQ 238
VMTIAF+F + H+Q+ VA+MARQY+R IISSVQR+A+ALS S + +
Sbjct: 629 CARSVMTIAFEFGIESHMQEHVASMARQYVRGIISSVQRVALALSPSHI-----SSQVGL 683
Query: 239 LSPV-TPEAATLPRWICQSYRFHFGDELIKSVDANSSNESILKAVWHHPSAILCCSLKAM 297
+P+ TPEA TL RWICQSYR + G EL+KS + NESILK +WHH AI+CCS+KA+
Sbjct: 684 RTPLGTPEAQTLARWICQSYRGYMGVELLKS--NSDGNESILKNLWHHTDAIICCSMKAL 741
Query: 298 PVFTFANQSGLDMLETTLVALQDMTLEKVFDDQGRKNLCTELPNIMEQGMACMEGGVCVS 357
PVFTFANQ+GLDMLETTLVALQD++LEK+FDD GRK LC+E P IM+QG AC++GG+C+S
Sbjct: 742 PVFTFANQAGLDMLETTLVALQDISLEKIFDDNGRKTLCSEFPQIMQQGFACLQGGICLS 801
Query: 358 SVGRAASYEKAVAWKVVDGDGGGAHCICFMFINWTFL 394
S+GR SYE+AVAWKV++ + AHCICF+FINW+F+
Sbjct: 802 SMGRPVSYERAVAWKVLN-EEENAHCICFVFINWSFV 837
>AT4G32880.1 | chr4:15863587-15867822 REVERSE LENGTH=834
Length = 833
Score = 431 bits (1107), Expect = e-121, Method: Compositional matrix adjust.
Identities = 216/397 (54%), Positives = 288/397 (72%), Gaps = 25/397 (6%)
Query: 1 MLLQDVSPPSLLQFLREHRSQWADSNLDAFFASTMKPNFCNLPMSRLGGFSGQVILPLAH 60
MLLQ+V P LL+FLREHR +WAD+++DA+ A+ +K C+LP+ R G F GQVILPLAH
Sbjct: 459 MLLQNVPPSILLRFLREHRQEWADNSIDAYSAAAIKAGPCSLPIPRPGSFGGQVILPLAH 518
Query: 61 TFEPEEFLEVIKLGNASNYQ-DTLVHRDLFLLQMYNGVEESSAGTCSELIFAPIDASFSD 119
T E EEF+EVIKL + +YQ D ++ D+FLLQM +GV+E++ +C+ELIFAPIDASFSD
Sbjct: 519 TIENEEFMEVIKLESLGHYQEDMMMPADIFLLQMCSGVDENAVESCAELIFAPIDASFSD 578
Query: 120 DSPLLPSGFRIIPIDSPLDTSSPNCTLDLASTLEAATPRXXXXXXXXXXXXXXXXXXXXX 179
D+P++PSGFRIIP+DS + SPN TLDLAS L+ +
Sbjct: 579 DAPIIPSGFRIIPLDSKSEGLSPNRTLDLASALDVGS-----------RTAGDSCGSRGN 627
Query: 180 XXXVMTIAFQFAFDGHLQDSVAAMARQYMRNIISSVQRIAVALSSSRLVPPGAGAAAAQL 239
VMTIAFQ AF+ H+Q++VA+MARQY+R++I+SVQR+A+ALS P + +
Sbjct: 628 SKSVMTIAFQLAFEMHMQENVASMARQYVRSVIASVQRVALALS-----PSSHQLSGLRP 682
Query: 240 SPVTPEAATLPRWICQSYRFHFGDELIKSVDANSSNESILKAVWHHPSAILCCSLKAM-P 298
P +PEA TL RWI SYR + G +L+K + +LK++WHHP A++CCSLKA+ P
Sbjct: 683 PPASPEAHTLARWISHSYRCYLGVDLLKPHGTD-----LLKSLWHHPDAVMCCSLKALSP 737
Query: 299 VFTFANQSGLDMLETTLVALQDMTLEKVFD-DQGRKNLCTELPNIMEQGMACMEGGVCVS 357
VFTFANQ+GLDMLETTLVALQD+TL+K+FD + G+K L +E P IM+QG CM+GG+C+S
Sbjct: 738 VFTFANQAGLDMLETTLVALQDITLDKIFDNNNGKKTLSSEFPQIMQQGFMCMDGGICMS 797
Query: 358 SVGRAASYEKAVAWKVVDGDGGGAHCICFMFINWTFL 394
S+GRA +YEKAV WKV++ D HCICFMF+NW+F+
Sbjct: 798 SMGRAVTYEKAVGWKVLN-DDEDPHCICFMFLNWSFI 833
>AT2G34710.1 | chr2:14639548-14643993 REVERSE LENGTH=853
Length = 852
Score = 388 bits (997), Expect = e-108, Method: Compositional matrix adjust.
Identities = 205/401 (51%), Positives = 280/401 (69%), Gaps = 26/401 (6%)
Query: 1 MLLQDVSPPSLLQFLREHRSQWADSNLDAFFASTMKPNFCNLPMSRLGGF-SGQVILPLA 59
MLLQ+V P L++FLREHRS+WAD +DA+ A++++ + +P +R GGF S QVILPLA
Sbjct: 471 MLLQNVPPAVLVRFLREHRSEWADYGVDAYAAASLRASPFAVPCARAGGFPSNQVILPLA 530
Query: 60 HTFEPEEFLEVIKL-GNASNYQDTLVHRDLFLLQMYNGVEESSAGTCSELIFAPIDASFS 118
T E EE LEV++L G+A + +D + RD++LLQ+ +GV+E+ G C++L+FAPID SF+
Sbjct: 531 QTVEHEESLEVVRLEGHAYSPEDMGLARDMYLLQLCSGVDENVVGGCAQLVFAPIDESFA 590
Query: 119 DDSPLLPSGFRIIPID--SPLDTSSPNCTLDLASTLEAATPRXXXXXXXXXXXXXXXXXX 176
DD+PLLPSGFRIIP++ S + +S N TLDLAS LE +T +
Sbjct: 591 DDAPLLPSGFRIIPLEQKSTPNGASANRTLDLASALEGSTRQAGEADPNGCNFRS----- 645
Query: 177 XXXXXXVMTIAFQFAFDGHLQDSVAAMARQYMRNIISSVQRIAVALSSSRLVPPGAGAAA 236
V+TIAFQF FD H +DSVA+MARQY+R+I+ S+QR+A+A++ P G+
Sbjct: 646 ------VLTIAFQFTFDNHSRDSVASMARQYVRSIVGSIQRVALAIA------PRPGSNI 693
Query: 237 AQLS-PVTPEAATLPRWICQSYRFHFGDELIKSVDANSSNESILKAVWHHPSAILCCSLK 295
+ +S P +PEA TL RWI +SY H G +L S D+ +S +++L +W+H AILCCSLK
Sbjct: 694 SPISVPTSPEALTLVRWISRSYSLHTGADLFGS-DSQTSGDTLLHQLWNHSDAILCCSLK 752
Query: 296 --AMPVFTFANQSGLDMLETTLVALQDMTLEKVFDDQGRKNLCTELPNIMEQGMACMEGG 353
A PVFTFANQ+GLDMLETTLVALQD+ L+K D+ GRK LC+E P IM+QG A + G
Sbjct: 753 TNASPVFTFANQTGLDMLETTLVALQDIMLDKTLDEPGRKALCSEFPKIMQQGYAHLPAG 812
Query: 354 VCVSSVGRAASYEKAVAWKVVDGDGGGAHCICFMFINWTFL 394
VC SS+GR SYE+A WKV++ D HC+ FMF+NW+F+
Sbjct: 813 VCASSMGRMVSYEQATVWKVLEDDESN-HCLAFMFVNWSFV 852
>AT5G60690.1 | chr5:24397734-24401933 FORWARD LENGTH=843
Length = 842
Score = 386 bits (992), Expect = e-107, Method: Compositional matrix adjust.
Identities = 197/405 (48%), Positives = 277/405 (68%), Gaps = 26/405 (6%)
Query: 1 MLLQDVSPPSLLQFLREHRSQWADSNLDAFFASTMKPNFCNLPMSRLGGFSG-QVILPLA 59
MLLQ+V P L++FLREHRS+WAD N+DA+ A+T+K P R F+G Q+I+PL
Sbjct: 453 MLLQNVPPAVLIRFLREHRSEWADFNVDAYSAATLKAGSFAYPGMRPTRFTGSQIIMPLG 512
Query: 60 HTFEPEEFLEVIKL-GNASNYQDTLVHRDLFLLQMYNGVEESSAGTCSELIFAPIDASFS 118
HT E EE LEV++L G++ +D + RD+ LLQ+ G++E++ G CSELIFAPI+ F
Sbjct: 513 HTIEHEEMLEVVRLEGHSLAQEDAFMSRDVHLLQICTGIDENAVGACSELIFAPINEMFP 572
Query: 119 DDSPLLPSGFRIIPIDSPLDT-----SSPNCTLDLASTLEAA-TPRXXXXXXXXXXXXXX 172
DD+PL+PSGFR+IP+D+ ++ + TLDL S+LE +P
Sbjct: 573 DDAPLVPSGFRVIPVDAKTGDVQDLLTANHRTLDLTSSLEVGPSPENASGNSFSSSSSRC 632
Query: 173 XXXXXXXXXXVMTIAFQFAFDGHLQDSVAAMARQYMRNIISSVQRIAVALSSSRLVPPGA 232
++TIAFQF F+ +LQ++VA MA QY+R++ISSVQR+A+A+S S + P
Sbjct: 633 ----------ILTIAFQFPFENNLQENVAGMACQYVRSVISSVQRVAMAISPSGISP--- 679
Query: 233 GAAAAQLSPVTPEAATLPRWICQSYRFHFGDELIKSVDANSSNESILKAVWHHPSAILCC 292
+ ++LSP +PEA TL +WI QSY H G EL+ ++D+ S++S+LK +W H AILCC
Sbjct: 680 -SLGSKLSPGSPEAVTLAQWISQSYSHHLGSELL-TIDSLGSDDSVLKLLWDHQDAILCC 737
Query: 293 SLKAMPVFTFANQSGLDMLETTLVALQDMTLEKVFDDQGRKNLCTELPNIMEQGMACMEG 352
SLK PVF FANQ+GLDMLETTLVALQD+TLEK+FD+ GRK +C++ +M+QG AC+
Sbjct: 738 SLKPQPVFMFANQAGLDMLETTLVALQDITLEKIFDESGRKAICSDFAKLMQQGFACLPS 797
Query: 353 GVCVSSVGRAASYEKAVAWKVV---DGDGGGAHCICFMFINWTFL 394
G+CVS++GR SYE+AVAWKV + + HC+ F F+NW+F+
Sbjct: 798 GICVSTMGRHVSYEQAVAWKVFAASEENNNNLHCLAFSFVNWSFV 842
>AT1G30490.1 | chr1:10796328-10800744 REVERSE LENGTH=842
Length = 841
Score = 382 bits (982), Expect = e-106, Method: Compositional matrix adjust.
Identities = 199/401 (49%), Positives = 271/401 (67%), Gaps = 33/401 (8%)
Query: 1 MLLQDVSPPSLLQFLREHRSQWADSNLDAFFASTMKPNFCNLPMSRLGGF-SGQVILPLA 59
MLLQ+V P L++FLREHR++WAD +DA+ A++++ +P R GGF S QVILPLA
Sbjct: 467 MLLQNVPPLVLIRFLREHRAEWADYGVDAYSAASLRATPYAVPCVRTGGFPSNQVILPLA 526
Query: 60 HTFEPEEFLEVIKLG-NASNYQDTLVHRDLFLLQMYNGVEESSAGTCSELIFAPIDASFS 118
T E EEFLEV++LG +A + +D + RD++LLQ+ +GV+E+ G C++L+FAPID SF+
Sbjct: 527 QTLEHEEFLEVVRLGGHAYSPEDMGLSRDMYLLQLCSGVDENVVGGCAQLVFAPIDESFA 586
Query: 119 DDSPLLPSGFRIIPID---SPLDTSSPNCTLDLASTLEAATPRXXXXXXXXXXXXXXXXX 175
DD+PLLPSGFR+IP+D +P D S + T DLAS+L+ +T
Sbjct: 587 DDAPLLPSGFRVIPLDQKTNPNDHQSASRTRDLASSLDGST----------------KTD 630
Query: 176 XXXXXXXVMTIAFQFAFDGHLQDSVAAMARQYMRNIISSVQRIAVALSSSRLVPPGAGAA 235
V+TIAFQF FD H +D+VA MARQY+RN++ S+QR+A+A++ PG+
Sbjct: 631 SETNSRLVLTIAFQFTFDNHSRDNVATMARQYVRNVVGSIQRVALAITPR----PGS--- 683
Query: 236 AAQLSPVTPEAATLPRWICQSYRFHFGDELIKSVDANSSNESILKAVWHHPSAILCCSLK 295
QL P +PEA TL RWI +SY H G +L + + +++LK +W H AILCCSLK
Sbjct: 684 -MQL-PTSPEALTLVRWITRSYSIHTGADLFGADSQSCGGDTLLKQLWDHSDAILCCSLK 741
Query: 296 --AMPVFTFANQSGLDMLETTLVALQDMTLEKVFDDQGRKNLCTELPNIMEQGMACMEGG 353
A PVFTFANQ+GLDMLETTLVALQD+ L+K DD GR+ LC+E IM+QG A + G
Sbjct: 742 TNASPVFTFANQAGLDMLETTLVALQDIMLDKTLDDSGRRALCSEFAKIMQQGYANLPAG 801
Query: 354 VCVSSVGRAASYEKAVAWKVVDGDGGGAHCICFMFINWTFL 394
+CVSS+GR SYE+A WKVVD D HC+ F ++W+F+
Sbjct: 802 ICVSSMGRPVSYEQATVWKVVD-DNESNHCLAFTLVSWSFV 841
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.322 0.134 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,103,858
Number of extensions: 320795
Number of successful extensions: 824
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 790
Number of HSP's successfully gapped: 5
Length of query: 394
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 293
Effective length of database: 8,337,553
Effective search space: 2442903029
Effective search space used: 2442903029
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 113 (48.1 bits)