BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0196600 Os01g0196600|U25430
(479 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G29680.1 | chr4:14538067-14539557 REVERSE LENGTH=497 625 e-179
AT4G29690.1 | chr4:14541084-14542457 REVERSE LENGTH=458 529 e-150
AT4G29700.1 | chr4:14543739-14545124 REVERSE LENGTH=462 509 e-145
AT4G29710.1 | chr4:14547001-14547402 REVERSE LENGTH=134 179 4e-45
>AT4G29680.1 | chr4:14538067-14539557 REVERSE LENGTH=497
Length = 496
Score = 625 bits (1611), Expect = e-179, Method: Compositional matrix adjust.
Identities = 291/392 (74%), Positives = 332/392 (84%)
Query: 86 KLEKPVVILISSDGFRFGYQHKAATPHIHRLIGNGTSAATGLVPIFPTLTFPNHYSIATG 145
KL+KPVV+LISSDGFRFGYQ K P IHRLI NGT A TGL+P+FPTLTFPNHYSI TG
Sbjct: 103 KLDKPVVLLISSDGFRFGYQFKTKLPSIHRLIANGTEAETGLIPVFPTLTFPNHYSIVTG 162
Query: 146 LYPSSHGIINNYFPDPISGDYFTMSSHEPKWWLGEPLWVTAADQGIQAATYFWPGSEVKK 205
LYP+ HGIINN+F DP +G+ FTM+SHEP+WWLGEPLW T +QG++AATYFWPGSEV K
Sbjct: 163 LYPAYHGIINNHFVDPETGNVFTMASHEPEWWLGEPLWETVVNQGLKAATYFWPGSEVHK 222
Query: 206 GSWDCPDKYCRHYNGSVPFEERVDAILGYFDLPSDEMPQFLTLYFEDPDHQGHQVGPDDP 265
GSW+CP C++YNGSVPF++RVD IL YFDLPS+E+P F+TLYFEDPDHQGHQVGPDDP
Sbjct: 223 GSWNCPQGLCQNYNGSVPFDDRVDTILSYFDLPSNEIPSFMTLYFEDPDHQGHQVGPDDP 282
Query: 266 AITEAVVRIDEMIGRLIAGLEERGVFEDVNVILVGDHGMVGTCDKKLVFLDELAPWIKLE 325
ITEAVV ID +IGRLI GLE+RG+FEDV +I+VGDHGMVGTCDKKLV LD+LAPWIK+
Sbjct: 283 QITEAVVNIDRLIGRLIDGLEKRGIFEDVTMIMVGDHGMVGTCDKKLVVLDDLAPWIKIP 342
Query: 326 EDWVLSMTPLLAIRPPDDMSLPDVVAKMNEGLGSGKVENGEYLRMYLKEDLPSRLHYADS 385
WV TPLLAI+PP D+VAK+NEGL SGKVENG+YL++YLKEDLPSRLHY DS
Sbjct: 343 SSWVQYYTPLLAIQPPSGHDAADIVAKINEGLSSGKVENGKYLKVYLKEDLPSRLHYVDS 402
Query: 386 YRIPPIIGLPEEGYKVEMKRSDKNECGGAHGYDNAFFSMRTIFIAHGPRFEGGRVVPSFE 445
RIPPIIGL +EG+KVE K+S ECGGAHGYDNAFFSMRTIFI HGP F GR VPSFE
Sbjct: 403 DRIPPIIGLVDEGFKVEQKKSKAKECGGAHGYDNAFFSMRTIFIGHGPMFSKGRKVPSFE 462
Query: 446 NVEIYNVIASILNLEPAPNNGSSSFPDTILLP 477
NV+IYNVI+SIL L+ APNNGS F +ILLP
Sbjct: 463 NVQIYNVISSILGLKAAPNNGSDEFSSSILLP 494
>AT4G29690.1 | chr4:14541084-14542457 REVERSE LENGTH=458
Length = 457
Score = 529 bits (1363), Expect = e-150, Method: Compositional matrix adjust.
Identities = 250/400 (62%), Positives = 309/400 (77%), Gaps = 9/400 (2%)
Query: 86 KLEKPVVILISSDGFRFGYQHKAATPHIHRLIGNGTSAATGLVPIFPTLTFPNHYSIATG 145
KL KPVV+LIS DGFRFGYQ K TP+I LI GT A TGL+P+FPT+TFPNHYSIATG
Sbjct: 51 KLNKPVVLLISCDGFRFGYQFKTETPNIDLLISRGTEAKTGLIPVFPTMTFPNHYSIATG 110
Query: 146 LYPSSHGIINNYFPDPISGDYFTMSSHEPKWWLGEPLWVTAADQGIQAATYFWPGSEVKK 205
LYP+SHGII N F DP+SG+ F + + PKWWLGEPLWVTA +QG+ AATYFWPG++V K
Sbjct: 111 LYPASHGIIMNKFTDPVSGELFNRNLN-PKWWLGEPLWVTAVNQGLMAATYFWPGADVHK 169
Query: 206 GSWDCPDKYCRH-YNGSVPFEERVDAILGYFDLPSDEMPQFLTLYFEDPDHQGHQVGPDD 264
GSW+CP +C+ YN SVP EERVD IL YFDLP E+P F+ LYF++PD QGH+ GPDD
Sbjct: 170 GSWNCPKGFCKAPYNVSVPLEERVDTILNYFDLPEREIPDFMALYFDEPDIQGHEYGPDD 229
Query: 265 PAITEAVVRIDEMIGRLIAGLEERGVFEDVNVILVGDHGMVGTCDKKLVFLDELAPWIKL 324
P +TEAV ++D+MIGR+I GLE+R VF DV+VIL+GDHGMV CDKK++++D+LA WIK+
Sbjct: 230 PRVTEAVSKVDKMIGRIIMGLEKRKVFSDVHVILLGDHGMVTNCDKKVIYIDDLADWIKI 289
Query: 325 EEDWVLSMTPLLAIRPP--DDMSLP-----DVVAKMNEGLGSGKVENGEYLRMYLKEDLP 377
DW+ +P+LA+ P D+ P ++V KMNE L SGKV NGE+L++YLKE+LP
Sbjct: 290 PADWIQDYSPVLAMNPRWGKDVKNPGQKNAELVRKMNEALSSGKVANGEFLQVYLKENLP 349
Query: 378 SRLHYADSYRIPPIIGLPEEGYKVEMKRSDKNECGGAHGYDNAFFSMRTIFIAHGPRFEG 437
RLHY+DS RIPPIIG+ EG V+ R+ EC G HGYDN FFSMR+IF+ +GPRF
Sbjct: 350 QRLHYSDSSRIPPIIGMVGEGLMVKQNRTYVQECSGTHGYDNMFFSMRSIFVGYGPRFRR 409
Query: 438 GRVVPSFENVEIYNVIASILNLEPAPNNGSSSFPDTILLP 477
G VPSFENV++YN +A IL L PAPNNGSS F ++LLP
Sbjct: 410 GIKVPSFENVQVYNAVAEILGLRPAPNNGSSLFTRSLLLP 449
>AT4G29700.1 | chr4:14543739-14545124 REVERSE LENGTH=462
Length = 461
Score = 509 bits (1312), Expect = e-145, Method: Compositional matrix adjust.
Identities = 240/402 (59%), Positives = 301/402 (74%), Gaps = 10/402 (2%)
Query: 86 KLEKPVVILISSDGFRFGYQHKAATPHIHRLIGNGTSAATGLVPIFPTLTFPNHYSIATG 145
KL KPVV++IS DGFRFGYQ K TP+I LI GT A GL+P+FPT+TFPNHYSIATG
Sbjct: 54 KLNKPVVLMISCDGFRFGYQFKTDTPNIDLLISGGTEAKHGLIPVFPTMTFPNHYSIATG 113
Query: 146 LYPSSHGIINNYFPDPISGDYFTMSSHEPKWWLGEPLWVTAADQGIQAATYFWPGSEVKK 205
LYP+ HGII N F DP++G+ F +PKWWLGEPLWVTA +QG++A TYFWPGSEV K
Sbjct: 114 LYPAYHGIIMNKFTDPVTGEVFN-KGLQPKWWLGEPLWVTAVNQGLKAVTYFWPGSEVLK 172
Query: 206 GSWDCPDKYCRHYNGSVPFEERVDAILGYFDLPSDEMPQFLTLYFEDPDHQGHQVGPDDP 265
SW CP+ YC H+N SVP EERVD++L +FD DE+P L LYF++PD GH GPDDP
Sbjct: 173 SSWTCPEGYCPHFNLSVPLEERVDSVLSHFDHLEDEVPDLLMLYFDEPDQSGHNYGPDDP 232
Query: 266 AITEAVVRIDEMIGRLIAGLEERGVFEDVNVILVGDHGMVGT--CDKKLVFLDELAPWIK 323
+T AV R+D+MIGR+I GL++R +F++V+VIL+GDHGMV C++K +++D+LA WIK
Sbjct: 233 RVTTAVSRVDKMIGRVIKGLKQREIFDEVHVILLGDHGMVTNCECNEKAIYIDDLADWIK 292
Query: 324 LEEDWVLSMTPLLAIRPP-------DDMSLPDVVAKMNEGLGSGKVENGEYLRMYLKEDL 376
+ W+ + +P+LAI P +VVAKMNE L SGKV+NGE+L++YLKE L
Sbjct: 293 IPAAWIQAYSPVLAINPQWGKDVENQSEKNAEVVAKMNEALSSGKVKNGEFLKVYLKEKL 352
Query: 377 PSRLHYADSYRIPPIIGLPEEGYKVEMKRSDKNECGGAHGYDNAFFSMRTIFIAHGPRFE 436
P RLH+++SYRIPPIIG+ EG V R++ C G HGYDN FSMRTIF+ HG RF
Sbjct: 353 PERLHFSESYRIPPIIGIVGEGLMVRQNRTNAQVCYGDHGYDNELFSMRTIFVGHGSRFS 412
Query: 437 GGRVVPSFENVEIYNVIASILNLEPAPNNGSSSFPDTILLPS 478
G+ VPSFENV+IYNV+A +L L PAPNNGSS FP +ILLPS
Sbjct: 413 RGKKVPSFENVQIYNVVAELLGLRPAPNNGSSLFPRSILLPS 454
>AT4G29710.1 | chr4:14547001-14547402 REVERSE LENGTH=134
Length = 133
Score = 179 bits (453), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 84/125 (67%), Positives = 97/125 (77%)
Query: 353 MNEGLGSGKVENGEYLRMYLKEDLPSRLHYADSYRIPPIIGLPEEGYKVEMKRSDKNECG 412
MNE L SGKV+NGE+L +YLKE LP RLHY+ SYRIPPIIG+ EG V R++ EC
Sbjct: 1 MNEALSSGKVKNGEFLTVYLKEKLPDRLHYSQSYRIPPIIGMVGEGLIVRQNRTNAQECY 60
Query: 413 GAHGYDNAFFSMRTIFIAHGPRFEGGRVVPSFENVEIYNVIASILNLEPAPNNGSSSFPD 472
G HGYDN FFSMRTIF+ HG RF G+ VPSFENV+IY+V+A IL L PAPNNGSS FP
Sbjct: 61 GDHGYDNKFFSMRTIFVGHGSRFRRGKKVPSFENVQIYSVVADILGLRPAPNNGSSLFPR 120
Query: 473 TILLP 477
+ILLP
Sbjct: 121 SILLP 125
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.140 0.440
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 10,337,367
Number of extensions: 492496
Number of successful extensions: 975
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 969
Number of HSP's successfully gapped: 4
Length of query: 479
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 377
Effective length of database: 8,310,137
Effective search space: 3132921649
Effective search space used: 3132921649
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 114 (48.5 bits)