BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0195500 Os01g0195500|AK070619
         (199 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G11900.1  | chr5:3834154-3836023 FORWARD LENGTH=199            278   2e-75

>AT5G11900.1 | chr5:3834154-3836023 FORWARD LENGTH=199
          Length = 198

 Score =  278 bits (710), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 143/200 (71%), Positives = 156/200 (78%), Gaps = 6/200 (3%)

Query: 3   AEKPAPVRVLYCGVCGLPAEYCEFGPDFERCKPWLRANAPGVYPDELLXXXXXXXXDVDK 62
           AEK  PV+VLYCGVC LPAEYCEFGPDF RCKPWL  NAP +YPD L           D 
Sbjct: 2   AEKLEPVKVLYCGVCSLPAEYCEFGPDFARCKPWLVENAPDLYPDLL---KEANEKAADN 58

Query: 63  VGERLQGVGIXXXXXX---XXXXXXXXXKQEEVKRLPGGKVKKKDKQEVVIEKIVRNKRK 119
           V ++LQ VGI                  K+EEVKRLPGGKVKKKD+QEV+IEK+VRNKRK
Sbjct: 59  VSDKLQSVGISSGGADGAPSSAQTGGTSKKEEVKRLPGGKVKKKDRQEVIIEKVVRNKRK 118

Query: 120 CVTVVKGLELFGVKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDISYDIVEFITDTW 179
           C+T+VKGLELFG+KLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDI YDIVEFITDTW
Sbjct: 119 CITIVKGLELFGIKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDIIYDIVEFITDTW 178

Query: 180 PDVPESAIFFIEDGRKVPAA 199
           PDVPE +IFFIEDG+KV A 
Sbjct: 179 PDVPERSIFFIEDGKKVQAG 198



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.139    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,988,585
Number of extensions: 146983
Number of successful extensions: 415
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 414
Number of HSP's successfully gapped: 1
Length of query: 199
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 106
Effective length of database: 8,556,881
Effective search space: 907029386
Effective search space used: 907029386
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 109 (46.6 bits)