BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0190000 Os01g0190000|Os01g0190000
         (335 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G21360.1  | chr3:7522865-7524036 FORWARD LENGTH=331            422   e-118

>AT3G21360.1 | chr3:7522865-7524036 FORWARD LENGTH=331
          Length = 330

 Score =  422 bits (1085), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 194/246 (78%), Positives = 223/246 (90%), Gaps = 1/246 (0%)

Query: 88  GYAELPYVGGAAPRSNVVGRVFTANESPPDQKIPFHHEMAQVPTFPAKLFFFCEVEPKIG 147
           G+ ELPYVGGAAPR++VVGRVFTANESPPDQKIPFHHEMAQV  FP+KLFF+CE+EPK G
Sbjct: 85  GFDELPYVGGAAPRTSVVGRVFTANESPPDQKIPFHHEMAQVREFPSKLFFYCEIEPKCG 144

Query: 148 GETPIVLSHYVYKRMKEKYPEFVEKLEKDGLIYTRVLGEGDDPSSPIGRGWHSTFLTKDK 207
           GETPIVLSH VY+RMK+K+PEFV++LE+ GL+Y RVLGE DDPSSPIGRGW STFLT DK
Sbjct: 145 GETPIVLSHVVYERMKDKHPEFVQRLEEHGLLYVRVLGEDDDPSSPIGRGWKSTFLTHDK 204

Query: 208 SIAEERAAKLGMKLEWTED-GVKTIMGPIPAVKWDESRGRKIWFNSMVAAYTGWKDARND 266
           ++AE+RA  LGMKLEWTED G KT+MGPIPA+K+DESR RK+WFNSMVAAYTGW+D RND
Sbjct: 205 NLAEQRAVDLGMKLEWTEDGGAKTVMGPIPAIKYDESRNRKVWFNSMVAAYTGWEDKRND 264

Query: 267 PVRAVTFGDGSPLPADVIAGCGEILEEECVAVPWRQGDILLIDNWAVLHSRRSFEPPRRI 326
           P +AVTFGDG PLPAD++  C  ILEEECVAVPW++GD+LLIDNWAVLHSRR F+PPRR+
Sbjct: 265 PRKAVTFGDGKPLPADIVHDCLRILEEECVAVPWQRGDVLLIDNWAVLHSRRPFDPPRRV 324

Query: 327 LASLCK 332
           LASLCK
Sbjct: 325 LASLCK 330



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.137    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,807,921
Number of extensions: 292594
Number of successful extensions: 549
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 548
Number of HSP's successfully gapped: 1
Length of query: 335
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 236
Effective length of database: 8,392,385
Effective search space: 1980602860
Effective search space used: 1980602860
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 112 (47.8 bits)