BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0188900 Os01g0188900|AK066235
(147 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G04710.1 | chr3:1278229-1280942 FORWARD LENGTH=457 99 1e-21
AT2G03430.1 | chr2:1036192-1037536 REVERSE LENGTH=241 63 5e-11
AT2G25600.1 | chr2:10894603-10898369 FORWARD LENGTH=889 49 8e-07
AT4G32500.1 | chr4:15681122-15685214 FORWARD LENGTH=881 49 1e-06
AT2G14255.1 | chr2:6036974-6040892 FORWARD LENGTH=537 48 2e-06
AT4G19150.1 | chr4:10471578-10472677 REVERSE LENGTH=244 48 2e-06
AT3G12360.1 | chr3:3934146-3936495 FORWARD LENGTH=591 47 3e-06
AT3G02850.1 | chr3:619701-623473 REVERSE LENGTH=829 47 4e-06
AT1G07710.1 | chr1:2386275-2387986 REVERSE LENGTH=544 47 4e-06
AT5G20350.1 | chr5:6876772-6881102 FORWARD LENGTH=621 45 1e-05
>AT3G04710.1 | chr3:1278229-1280942 FORWARD LENGTH=457
Length = 456
Score = 98.6 bits (244), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 51/136 (37%), Positives = 81/136 (59%), Gaps = 2/136 (1%)
Query: 10 SLDAVLALNKHGIGVLHAAACQGHLNVCKFLVEELGGDVNIAGKEDITPFMAAAESGDVP 69
+++++ NK G LH AA +G +C++L+EEL + + + TP + AA G +
Sbjct: 46 TVESIKDANKRG--ALHFAAREGQTEICRYLLEELKLNADAKDETGDTPLVHAARQGQIE 103
Query: 70 TVEYFLDHSGDVTKADVRGCTVLHHAAGTGCCKVTEFLLSKGIPVDIDCGLGTPLFHAAN 129
TV+Y L+ D A G T LHHAAGTG ++ + LLS+G+PVD + GTPL AA
Sbjct: 104 TVKYLLEQGADPNIASELGATALHHAAGTGEIELLKELLSRGVPVDSESESGTPLIWAAG 163
Query: 130 NGKDKTLKILLDHKAD 145
+ + +++LL+H A+
Sbjct: 164 HDQKNAVEVLLEHNAN 179
>AT2G03430.1 | chr2:1036192-1037536 REVERSE LENGTH=241
Length = 240
Score = 63.2 bits (152), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 65/131 (49%), Gaps = 3/131 (2%)
Query: 18 NKHGIGVLHAAACQGHLNVCKFLV--EELGGDVNIAGKEDITPFMAAAESGDVPTVEYFL 75
N+ G +LH AA GH + K L +E +N E P +AA G+ VE L
Sbjct: 44 NEDGRSLLHVAASFGHSQIVKLLSSSDEAKTVINSKDDEGWAPLHSAASIGNAELVEVLL 103
Query: 76 DHSGDVTKADVRGCTVLHHAAGTGCCKVTEFLLSKGIPVDIDCGLG-TPLFHAANNGKDK 134
DV + G T LH+AA G ++ + LL+ G ++I +G TPL AA+ GK +
Sbjct: 104 TRGADVNAKNNGGRTALHYAASKGRLEIAQLLLTHGAKINITDKVGCTPLHRAASVGKLE 163
Query: 135 TLKILLDHKAD 145
+ L++ A+
Sbjct: 164 VCEFLIEEGAE 174
Score = 55.8 bits (133), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 57/127 (44%), Gaps = 2/127 (1%)
Query: 20 HGIGVLHAAACQGHLNVCKFLVEELGGDVNIAGKEDITPFMAAAESGDVPTVEYFLDHSG 79
G LH+AA G+ + + L+ G DVN T AA G + + L H
Sbjct: 82 EGWAPLHSAASIGNAELVEVLLTR-GADVNAKNNGGRTALHYAASKGRLEIAQLLLTHGA 140
Query: 80 DVTKADVRGCTVLHHAAGTGCCKVTEFLLSKGIPVDIDCGLG-TPLFHAANNGKDKTLKI 138
+ D GCT LH AA G +V EFL+ +G +D +G T L H+ + +
Sbjct: 141 KINITDKVGCTPLHRAASVGKLEVCEFLIEEGAEIDATDKMGQTALMHSVICDDKQVAFL 200
Query: 139 LLDHKAD 145
L+ H AD
Sbjct: 201 LIRHGAD 207
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 51/117 (43%), Gaps = 1/117 (0%)
Query: 14 VLALNKHGIGVLHAAACQGHLNVCKFLVEELGGDVNIAGKEDITPFMAAAESGDVPTVEY 73
V A N G LH AA +G L + + L+ G +NI K TP AA G + E+
Sbjct: 109 VNAKNNGGRTALHYAASKGRLEIAQLLLTH-GAKINITDKVGCTPLHRAASVGKLEVCEF 167
Query: 74 FLDHSGDVTKADVRGCTVLHHAAGTGCCKVTEFLLSKGIPVDIDCGLGTPLFHAANN 130
++ ++ D G T L H+ +V L+ G VD++ G + A N
Sbjct: 168 LIEEGAEIDATDKMGQTALMHSVICDDKQVAFLLIRHGADVDVEDKEGYTVLGRATN 224
>AT2G25600.1 | chr2:10894603-10898369 FORWARD LENGTH=889
Length = 888
Score = 49.3 bits (116), Expect = 8e-07, Method: Composition-based stats.
Identities = 45/159 (28%), Positives = 66/159 (41%), Gaps = 33/159 (20%)
Query: 17 LNKHGIGVLHAAACQGHLNVCKFLVEELGGDVNIAGKEDITPFMAA------------AE 64
++K G LH AA +G + C L+ E G D NI E P A AE
Sbjct: 573 MDKDGRTALHIAASKGS-HYCVVLLLEHGADPNIRDSEGNVPLWEAIIGRHREIAKLLAE 631
Query: 65 SG---DVPTVEYF----------------LDHSGDVTKADVRGCTVLHHAAGTGCCKVTE 105
+G + +V YF + + GDVT D G T LH A G ++ +
Sbjct: 632 NGAKLSLDSVSYFSGLAVEKNCLDALKDIIKYGGDVTLPDGNGTTALHRAVSEGHLEIVK 691
Query: 106 FLLSKGIPVDIDCGLG-TPLFHAANNGKDKTLKILLDHK 143
FLL +G +D G TP A + G ++ + +H+
Sbjct: 692 FLLDQGADLDWPDSYGWTPRGLADHQGNEEIKTLFHNHR 730
>AT4G32500.1 | chr4:15681122-15685214 FORWARD LENGTH=881
Length = 880
Score = 48.5 bits (114), Expect = 1e-06, Method: Composition-based stats.
Identities = 39/129 (30%), Positives = 54/129 (41%), Gaps = 32/129 (24%)
Query: 18 NKHGIGVLHAAACQGHLNVCKFLVEELGGDVNIAGKEDITPFMAA------------AES 65
+K+G LH AA +G C L+ E G D NI E P A +E+
Sbjct: 572 DKNGRTALHIAASKGS-QYCVVLLLEHGADPNIRDSEGSVPLWEAIIGRHEENAKLLSEN 630
Query: 66 G---DVPTVEYF----------------LDHSGDVTKADVRGCTVLHHAAGTGCCKVTEF 106
G TV YF + + GD++ +DV G T LH A G ++ +F
Sbjct: 631 GATLSFDTVGYFSCLAVGQNNLNALKDIVKYGGDISLSDVNGTTALHRAVSEGNLEIVQF 690
Query: 107 LLSKGIPVD 115
LL KG +D
Sbjct: 691 LLEKGADMD 699
>AT2G14255.1 | chr2:6036974-6040892 FORWARD LENGTH=537
Length = 536
Score = 48.1 bits (113), Expect = 2e-06, Method: Composition-based stats.
Identities = 40/130 (30%), Positives = 60/130 (46%), Gaps = 13/130 (10%)
Query: 18 NKHGIGVLHAAACQGHLNVCKFLVEELGGDVNIAGKEDITPFMAAAESGDVPTVEYFLDH 77
+ +G L AA L+V +++++ GGDVN A TP AA G + + L H
Sbjct: 55 DDNGFYALQWAALNNSLHVAQYIIQH-GGDVNSADNIQQTPLHWAAVKGSIDVADLLLQH 113
Query: 78 SGDVTKADVRGCTVLHHAAGTGCCKVTEFLLSKGIPVD-------IDCGLGTPLFHAANN 130
+ DV G +H A+ G T F+ I VD +D +PL AA N
Sbjct: 114 GARIEAVDVNGFRAVHVASQYG---QTAFV--NHIIVDYAADYNALDIEGRSPLHWAAYN 168
Query: 131 GKDKTLKILL 140
G +T+++LL
Sbjct: 169 GFTETVRLLL 178
>AT4G19150.1 | chr4:10471578-10472677 REVERSE LENGTH=244
Length = 243
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 60/141 (42%), Gaps = 9/141 (6%)
Query: 4 RVGPLASLDAVLALN--------KHGIGVLHAAACQGHLNVCKFLVEELGGDVNIAGKED 55
R G LA++ ++++ N KH LH AA GH V +L + DV A +D
Sbjct: 25 RSGDLAAVQSIISSNPLAVNSRDKHSRTPLHLAAWAGHNEVVSYLCKN-KADVGAAAGDD 83
Query: 56 ITPFMAAAESGDVPTVEYFLDHSGDVTKADVRGCTVLHHAAGTGCCKVTEFLLSKGIPVD 115
+ A++ G + V L G V +G T LH+AA ++ ++L+ KG V
Sbjct: 84 MGAIHFASQKGHLEVVRTLLSAGGSVKSITRKGLTPLHYAAQGSHFEIVKYLVKKGASVR 143
Query: 116 IDCGLGTPLFHAANNGKDKTL 136
G A N + +
Sbjct: 144 ATTKAGKSPADVAGNAETQNF 164
>AT3G12360.1 | chr3:3934146-3936495 FORWARD LENGTH=591
Length = 590
Score = 47.4 bits (111), Expect = 3e-06, Method: Composition-based stats.
Identities = 39/136 (28%), Positives = 62/136 (45%), Gaps = 3/136 (2%)
Query: 9 ASLDAVLALNKHGIGVLHAAACQGHLNVCKFLVEELGGDVNIAGKEDITPFMAAAESGDV 68
+S +++ N+ G LH AA QGH + + L++ G + TP ++AA G
Sbjct: 152 SSRESIAKKNRSGYDPLHIAAIQGHHAIVEVLLDHDATLSQTFGPSNATPLVSAAMRGHT 211
Query: 69 PTVEYFLDHSGDVTK-ADVRGCTVLHHAAGTGCCKVTEFLLSKG--IPVDIDCGLGTPLF 125
V L +G++ + + LH AA G +V + LLSK + ID T L
Sbjct: 212 EVVNQLLSKAGNLLEISRSNNKNALHLAARQGHVEVIKALLSKDPQLARRIDKKGQTALH 271
Query: 126 HAANNGKDKTLKILLD 141
A + +K+LLD
Sbjct: 272 MAVKGQSSEVVKLLLD 287
>AT3G02850.1 | chr3:619701-623473 REVERSE LENGTH=829
Length = 828
Score = 47.0 bits (110), Expect = 4e-06, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 61 AAAESGDVPTVEYFLDHSGDVTKADVRGCTVLHHAAGTGCCKVTEFLLSKGIPVDIDCGL 120
+AA GD+ ++ + GD K D G + LH AA G +T +L+ + + V+I L
Sbjct: 554 SAAFYGDLYQLKSLIRAGGDPNKTDYDGRSPLHLAASRGYEDITLYLIQESVDVNIKDKL 613
Query: 121 G-TPLFHAANNGKDKTLKILLDHKA 144
G TPL A NG D+ +L+ A
Sbjct: 614 GSTPLLEAIKNGNDRVAALLVKEGA 638
>AT1G07710.1 | chr1:2386275-2387986 REVERSE LENGTH=544
Length = 543
Score = 46.6 bits (109), Expect = 4e-06, Method: Composition-based stats.
Identities = 41/141 (29%), Positives = 63/141 (44%), Gaps = 3/141 (2%)
Query: 3 LRVGPLASLDAVLALNKHGIGVLHAAACQGHLNVCKFLVEELGGDVNIAGKEDITPFMAA 62
L+V A + + ++ LH AA QGH V FL+E IA T +A
Sbjct: 117 LKVLAEAHSELAMTVDLSNTTALHTAATQGHTEVVNFLLELGSSLAGIAKSNGKTALHSA 176
Query: 63 AESGDVPTVEYFLDHSGDVT-KADVRGCTVLHHAA-GTGCCKVTEFLLSKGIPVDI-DCG 119
+ +G V ++ L + + D +G T LH A GT V E + + ++I D
Sbjct: 177 SRNGHVKVIKALLASEPAIAIRMDKKGQTALHMAVKGTNVEVVEELIKADRSSINIADTK 236
Query: 120 LGTPLFHAANNGKDKTLKILL 140
T L AA G+ + +K+LL
Sbjct: 237 GNTALHIAARKGRSQIVKLLL 257
>AT5G20350.1 | chr5:6876772-6881102 FORWARD LENGTH=621
Length = 620
Score = 45.4 bits (106), Expect = 1e-05, Method: Composition-based stats.
Identities = 33/104 (31%), Positives = 44/104 (42%)
Query: 25 LHAAACQGHLNVCKFLVEELGGDVNIAGKEDITPFMAAAESGDVPTVEYFLDHSGDVTKA 84
++ AA G L LVE G V+ +A + V +Y ++H GDV
Sbjct: 35 VYTAAAYGDLEKLHRLVECEGSSVSEPDALGYYALQWSALNNRVAVAQYLIEHGGDVNAT 94
Query: 85 DVRGCTVLHHAAGTGCCKVTEFLLSKGIPVDIDCGLGTPLFHAA 128
D G T LH +A G +V E LL +G VD G H A
Sbjct: 95 DHTGQTALHWSAVRGAIQVAELLLQEGARVDATDMYGYQATHVA 138
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.140 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,245,663
Number of extensions: 129599
Number of successful extensions: 435
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 445
Number of HSP's successfully gapped: 16
Length of query: 147
Length of database: 11,106,569
Length adjustment: 89
Effective length of query: 58
Effective length of database: 8,666,545
Effective search space: 502659610
Effective search space used: 502659610
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 107 (45.8 bits)