BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0184700 Os01g0184700|AK061353
         (210 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G71780.1  | chr1:26995406-26996638 REVERSE LENGTH=198           85   3e-17

>AT1G71780.1 | chr1:26995406-26996638 REVERSE LENGTH=198
          Length = 197

 Score = 85.1 bits (209), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 45/92 (48%), Positives = 62/92 (67%), Gaps = 3/92 (3%)

Query: 28  PSVEVRLYRRGAGPVAVFRSALVGPRRDRLQVRAIQAEHGLRALFAFKPESSLRGIRIRP 87
           P VE+ LY+ G GP+ VF+S L G  +D+L+VR+I  ++GL+A+FAF  E   R + IR 
Sbjct: 46  PEVEIHLYKCGKGPIDVFKSNLGGYEQDQLEVRSILEKYGLKAIFAFNVEKG-RAVPIRF 104

Query: 88  GPAAAAGCSAVPFRDGAVIALDGEPKGSWTKP 119
            P    G S +P+RDGAVI +DGEP+ S  KP
Sbjct: 105 HP--RNGRSVLPYRDGAVIYIDGEPQDSLLKP 134



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.136    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,012,476
Number of extensions: 91921
Number of successful extensions: 142
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 141
Number of HSP's successfully gapped: 1
Length of query: 210
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 116
Effective length of database: 8,529,465
Effective search space: 989417940
Effective search space used: 989417940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 109 (46.6 bits)