BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0183000 Os01g0183000|Os01g0183000
(367 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G71697.1 | chr1:26971537-26973177 FORWARD LENGTH=347 428 e-120
AT1G74320.1 | chr1:27941192-27942903 FORWARD LENGTH=351 426 e-120
AT4G09760.2 | chr4:6148955-6151150 REVERSE LENGTH=347 401 e-112
AT2G26830.1 | chr2:11443599-11446958 FORWARD LENGTH=375 186 2e-47
>AT1G71697.1 | chr1:26971537-26973177 FORWARD LENGTH=347
Length = 346
Score = 428 bits (1101), Expect = e-120, Method: Compositional matrix adjust.
Identities = 210/332 (63%), Positives = 251/332 (75%), Gaps = 8/332 (2%)
Query: 28 PEEARRILHRLAGELWGGDV-DPAALAVSQLKGAMTNEVFRITWPXXXXXXXXXXXDHRK 86
PE+ +R+L L G WG V D L V LKGAMTNEV++I WP HRK
Sbjct: 16 PEDLKRVLQTL-GSSWGDVVEDLERLEVVPLKGAMTNEVYQINWPTLNGEDV-----HRK 69
Query: 87 VLVRIYGQGVEVFFDRADEVRTFECMSRHGQGPRLLGRFPNGRIEEFINARTLSAADLRD 146
VLVRIYG GV++FF+R DE++TFECMS HG GP+LLGRF +GR+EEFI+ARTLSA DLR
Sbjct: 70 VLVRIYGDGVDLFFNRGDEIKTFECMSHHGYGPKLLGRFSDGRLEEFIHARTLSADDLRV 129
Query: 147 AEISSLIAKKLREFHDLDMPGPKNVSLWQRLRRWLEEARGRCSPEEARQFSLEKLGDEIA 206
AE S IA KLREFH LDMPGPKNV LW+RLR WL+EA+ SP E ++ LE L +EI
Sbjct: 130 AETSDFIAAKLREFHKLDMPGPKNVLLWERLRTWLKEAKNLASPIEMDKYRLEGLENEIN 189
Query: 207 MLDIALSGVDQRVGFCHNDLQYGNIMIYEETRQVTLIDYEYASFNPVAFDIANHFCEMSA 266
+L+ L+ DQ +GFCHNDLQYGN+MI E T +T+IDYEY+SFNP+A+DIANHFCEM+A
Sbjct: 190 LLEERLTRDDQEIGFCHNDLQYGNVMIDEVTNAITIIDYEYSSFNPIAYDIANHFCEMAA 249
Query: 267 DYHSATPHVLDFTKYPGIDEQRRFVQTYLSSSGENPSDAEVEHLLGLIAKYSLASHIFWG 326
+YHS TPHVLD+T YPG E+RRF+ TYL S+G SD EVE LL Y+LA+HIFWG
Sbjct: 250 NYHSDTPHVLDYTLYPGEGERRRFISTYLGSTGNATSDKEVERLLKDAESYTLANHIFWG 309
Query: 327 LWGIISGHVNKNIDFEYQEYARQRFDQYWKTK 358
LWGIISGHVNK I+F+Y EYARQRF+QYW K
Sbjct: 310 LWGIISGHVNK-IEFDYMEYARQRFEQYWLRK 340
>AT1G74320.1 | chr1:27941192-27942903 FORWARD LENGTH=351
Length = 350
Score = 426 bits (1096), Expect = e-120, Method: Compositional matrix adjust.
Identities = 202/339 (59%), Positives = 254/339 (74%), Gaps = 8/339 (2%)
Query: 26 RVPEEARRILHRLAGELWGGDVDPAALAVSQLKGAMTNEVFRITWPXXXXXXXXXXXDHR 85
R+P E + L +A E W +D AL V LKGAMTNEVF+I WP R
Sbjct: 16 RLPREVKEALQAIASE-WEDVIDSKALQVIPLKGAMTNEVFQIKWPTREKGPS------R 68
Query: 86 KVLVRIYGQGVEVFFDRADEVRTFECMSRHGQGPRLLGRFPNGRIEEFINARTLSAADLR 145
KVLVRIYG+GVE+FFDR DE+RTFE MS+HG GP LLGRF NGRIEEF++ARTLSA DLR
Sbjct: 69 KVLVRIYGEGVEIFFDREDEIRTFEFMSKHGHGPLLLGRFGNGRIEEFLHARTLSACDLR 128
Query: 146 DAEISSLIAKKLREFHDLDMPGPKNVSLWQRLRRWLEEARGRCSPEEARQFSLEKLGDEI 205
D EIS IA +++EFH L+MPG K LW RLR WL + SPEEA+ F L+ + EI
Sbjct: 129 DPEISGRIATRMKEFHGLEMPGAKKALLWDRLRNWLTACKRLASPEEAKSFRLDVMEMEI 188
Query: 206 AMLDIALSGVDQRVGFCHNDLQYGNIMIYEETRQVTLIDYEYASFNPVAFDIANHFCEMS 265
ML+ +L D+ +GFCHNDLQYGNIM+ EET+ +T+IDYEY+ +NPVA+DIANHFCEM+
Sbjct: 189 NMLEKSLFDNDENIGFCHNDLQYGNIMMDEETKAITIIDYEYSCYNPVAYDIANHFCEMA 248
Query: 266 ADYHSATPHVLDFTKYPGIDEQRRFVQTYLSSSGENPSDAEVEHLLGLIAKYSLASHIFW 325
ADYH+ TPH++D++KYPG++E++RF++TY+S S E PSD V+ LL + KY+LASH+ W
Sbjct: 249 ADYHTETPHIMDYSKYPGVEERQRFLKTYMSYSDEKPSDTMVKKLLEDVEKYTLASHLIW 308
Query: 326 GLWGIISGHVNKNIDFEYQEYARQRFDQYWKTKDQTLGS 364
GLWGIIS HVN+ IDF+Y EYARQRF+QYW TK + L +
Sbjct: 309 GLWGIISEHVNE-IDFDYMEYARQRFEQYWLTKPRLLAA 346
>AT4G09760.2 | chr4:6148955-6151150 REVERSE LENGTH=347
Length = 346
Score = 401 bits (1031), Expect = e-112, Method: Compositional matrix adjust.
Identities = 192/336 (57%), Positives = 253/336 (75%), Gaps = 9/336 (2%)
Query: 28 PEEARRILHRLAGELWGGDV-DPAALAVSQLKGAMTNEVFRITWPXXXXXXXXXXXDHRK 86
P+E R+IL L+ + WG V D +L V +KGAMTNEVF ++WP RK
Sbjct: 14 PDELRKILQALSTK-WGDVVEDFESLEVKPMKGAMTNEVFMVSWPRKETNLRC-----RK 67
Query: 87 VLVRIYGQGVEVFFDRADEVRTFECMSRHGQGPRLLGRFPNGRIEEFINARTLSAADLRD 146
+LVR+YG+GVE+FF+R DE+RTFE ++RHG GP LLGRF GR+EEFI+ARTLSA DLRD
Sbjct: 68 LLVRVYGEGVELFFNRDDEIRTFEYVARHGHGPTLLGRFAGGRVEEFIHARTLSATDLRD 127
Query: 147 AEISSLIAKKLREFHDLDMPGPKNVSLWQRLRRWLEEARGRCSPEEARQFSLEKLGDEIA 206
IS+L+A KLR FH + +PG + + +W R+R W+ +A+ CS E + +F L+ + DEI
Sbjct: 128 PNISALVASKLRRFHSIHIPGDRIMLIWDRMRTWVGQAKNLCSNEHSTEFGLDDIEDEIN 187
Query: 207 MLDIALSGVDQRVGFCHNDLQYGNIMIYEETRQVTLIDYEYASFNPVAFDIANHFCEMSA 266
+L+ ++ +Q +GFCHNDLQYGNIMI EET +T+IDYEYAS+NP+A+DIANHFCEM+A
Sbjct: 188 LLEQEVNN-EQEIGFCHNDLQYGNIMIDEETNAITIIDYEYASYNPIAYDIANHFCEMAA 246
Query: 267 DYHSATPHVLDFTKYPGIDEQRRFVQTYLSSSGENPSDAEVEHLLGLIAKYSLASHIFWG 326
DYHS TPH+LD+T YPG +E+RRF+ YL+SSGE + ++E LL I KY+LASH+FWG
Sbjct: 247 DYHSNTPHILDYTLYPGEEERRRFICNYLTSSGEEAREEDIEQLLDDIEKYTLASHLFWG 306
Query: 327 LWGIISGHVNKNIDFEYQEYARQRFDQYWKTKDQTL 362
LWGIISG+VNK I+F+Y EY+RQRF QYW K + L
Sbjct: 307 LWGIISGYVNK-IEFDYIEYSRQRFKQYWLRKPKLL 341
>AT2G26830.1 | chr2:11443599-11446958 FORWARD LENGTH=375
Length = 374
Score = 186 bits (471), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 110/325 (33%), Positives = 172/325 (52%), Gaps = 21/325 (6%)
Query: 45 GDVDPAALAVSQLKGAMTNEVFRITWPXXXXXXXXXXXDHRKVLVRIYGQGVEVFFDRAD 104
G++D + +V ++ G +TN + +++ V VR+YG E +R
Sbjct: 55 GELDDSLFSVERVSGGITNLLLKVS-------VKEDTNKEVSVTVRLYGPNTEYVINRER 107
Query: 105 EVRTFECMSRHGQGPRLLGRFPNGRIEEFINARTLSAADLRDAEISSLIAKKLREFHDLD 164
E+ + +S G G +LLG F NG ++ FINARTL +D+R+ +I++ IA++L +FH +D
Sbjct: 108 EILAIKYLSAAGFGAKLLGGFGNGMVQSFINARTLEPSDMREPKIAAQIARELGKFHKVD 167
Query: 165 MPGPKNVSLWQRLRRWLEEARGRCSPEEARQ-----FSLEKLGDEIAMLDIALSGVDQRV 219
+PG K LW + ++ E+A E +Q S E+L EI L ++ V
Sbjct: 168 IPGSKEPQLWVDILKFYEKASTLTFEEPDKQKLFETISFEELHKEIIELREFTGLLNAPV 227
Query: 220 GFCHNDLQYGNIMIYEETRQVTLIDYEYASFNPVAFDIANHFCEMSADYHSATPHVLDFT 279
F HNDL GN M+ +E ++ LID+EY S+N FDI NHF E + + D++
Sbjct: 228 VFAHNDLLSGNFMLNDEEEKLYLIDFEYGSYNYRGFDIGNHFNEYAG-------YDCDYS 280
Query: 280 KYPGIDEQRRFVQTYLSSSGENP-SDAEVEHLLGLIAKYSLASHIFWGLWGIISGHVNKN 338
YP +EQ F++ YL + S AEVE + Y LASH++W +W II ++
Sbjct: 281 LYPSKEEQYHFIKHYLQPDKPDEVSIAEVESVFVETDAYKLASHLYWAIWAIIQARMSP- 339
Query: 339 IDFEYQEYARQRFDQYWKTKDQTLG 363
I+FEY Y R+++Y K K T
Sbjct: 340 IEFEYLGYFFLRYNEYKKQKPLTFS 364
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.137 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,503,219
Number of extensions: 303347
Number of successful extensions: 772
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 761
Number of HSP's successfully gapped: 4
Length of query: 367
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 267
Effective length of database: 8,364,969
Effective search space: 2233446723
Effective search space used: 2233446723
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 112 (47.8 bits)