BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0182400 Os01g0182400|AK070335
         (467 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G36960.3  | chr2:15523552-15527245 FORWARD LENGTH=745          172   4e-43
AT4G39380.2  | chr4:18309628-18311874 REVERSE LENGTH=535          115   4e-26

>AT2G36960.3 | chr2:15523552-15527245 FORWARD LENGTH=745
          Length = 744

 Score =  172 bits (436), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 147/451 (32%), Positives = 204/451 (45%), Gaps = 105/451 (23%)

Query: 86  SGKIALQLFPIDEEFQKSLQQKNHNPYLELTVAPRKKISSVLQHLNTKWGNSQCARGELM 145
           S K+ LQLFPIDE  ++SL+   HNP+LELT++ RKKISSVL+HLN KWG+S CA GEL+
Sbjct: 318 SAKLKLQLFPIDECTRRSLEMDKHNPHLELTLSNRKKISSVLEHLNRKWGSSSCATGELL 377

Query: 146 LFPDGTRLDNINGSERWTRSDSCTAADVHVAVGSPSTFRLRYGWFPPNFGEQNSGVSLGL 205
           LFP   R + +   +RWT     +AA+VH  VGSPS FRLRYGWF               
Sbjct: 378 LFPYNARKETVTCHQRWTHDSFLSAAEVHSMVGSPSVFRLRYGWF--------------- 422

Query: 206 VHSA-GNIIDNEPLD---PVVREQKQMTALSEF-----------------------PS-- 236
           VH A G+II   P     P + +   +  L+E                        PS  
Sbjct: 423 VHDASGSIISQVPTSDPCPSLEDDMNVDRLNEVNMLLTESGPLSVHSTAEQTTSVEPSQG 482

Query: 237 ----------------NFAAPSTEANTVKTMKQDNQSKETPLSWIDCISNISFGALLAEA 280
                           ++   ST    ++ +   N   ++P  W D ++NIS G LL+E 
Sbjct: 483 LVCASGVHDRPARSRDDYEPASTSITPLEHLSGGN--AQSPGEWADSLTNISIGDLLSEV 540

Query: 281 APSQDSKX----XXXXXXXXXXXIPLTADSFDAAIASLIARQQASSQPKVSTP------S 330
               DS                 +P T+DSFDAAIA+ I R Q  ++P    P      S
Sbjct: 541 PDDIDSDGVDPPATEGSHYLLRDVPFTSDSFDAAIAAHILRHQ--NKPSAQLPLTSGSSS 598

Query: 331 LWDAEETCHAFPSQ-NRISRRTP-GTTPSSCGASTLSVLGTILESGTDGEKQCSTEDRRE 388
           LWD EET  AF  Q NR +  T   +  S  G   ++   + L   + G+          
Sbjct: 599 LWDDEETRDAFSFQKNRFANSTELASVASPKGVGRVNGEPSQLVEASSGD---------- 648

Query: 389 EPNPQASLLANDDNNVKPDIPVS----ESTGEPRLG-ASCFQSESTGEPEVGASCSRLLS 443
               + S   +DD +   + P      +S G+   G A  +  +S G  ++    S+   
Sbjct: 649 ----EGSYNPHDDGDPMEEGPADPHTMDSPGKTPCGLADVYWPDSLGPLDLDIRSSKY-- 702

Query: 444 GTDSLSVSD-------LLANSLDAFQKFSVF 467
            TD L +S+       L+A SLDAFQ  S+F
Sbjct: 703 -TDDLILSESLGGLSRLIATSLDAFQNCSLF 732



>AT4G39380.2 | chr4:18309628-18311874 REVERSE LENGTH=535
          Length = 534

 Score =  115 bits (289), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 73/213 (34%), Positives = 116/213 (54%), Gaps = 16/213 (7%)

Query: 72  FHDSKNVSARPPCHSGKIALQLFPIDEEFQKSLQQKNHNPYLELTVAPRKKISSVLQHLN 131
            H SK+V       SGK+ LQLFP+D   ++ L++   +PYLELT++ RKKISSVLQ ++
Sbjct: 79  IHSSKDVP-----RSGKMKLQLFPLDAHTREGLEKDGFHPYLELTLSSRKKISSVLQRIH 133

Query: 132 TKWGNSQCARGELMLFPDGTRLDNINGSERWTRSDSCTAADVHVAVGSPSTFRLRYGWFP 191
           +KWG+S+ ARG+  L+P  T +  +    +W  + + T  +V+ A+G+P  FRLRYGW  
Sbjct: 134 SKWGSSEIARGDPTLYPYDTSV--LASGHKWVANSNITTGNVYEAIGAPFIFRLRYGWSS 191

Query: 192 PNFGEQNSGVSLGLVHSAGNIIDNEPLDPVVREQKQMT---ALSEFPSNFAAPSTEANTV 248
               + N   S     +   ++ +E    ++    Q+T    L   P +    STE    
Sbjct: 192 ATENKTNEPPSPSTPGTGTQMLGSENPLTMLSSPNQVTDTPPLENLPHDGQVESTEN--- 248

Query: 249 KTMKQDNQSKETPLSWIDCISNISFGALLAEAA 281
              K ++ S  T L W D ++++S G LL+E +
Sbjct: 249 ---KINDGSGPTLLFWDDGLTSLSIGGLLSEVS 278



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.311    0.126    0.366 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 10,297,184
Number of extensions: 435019
Number of successful extensions: 899
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 895
Number of HSP's successfully gapped: 3
Length of query: 467
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 365
Effective length of database: 8,310,137
Effective search space: 3033200005
Effective search space used: 3033200005
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 113 (48.1 bits)