BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0178200 Os01g0178200|Os01g0178200
         (333 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G19930.1  | chr5:6737872-6739283 REVERSE LENGTH=289            287   6e-78

>AT5G19930.1 | chr5:6737872-6739283 REVERSE LENGTH=289
          Length = 288

 Score =  287 bits (734), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 156/301 (51%), Positives = 195/301 (64%), Gaps = 39/301 (12%)

Query: 33  KSVDSTAVFVGVPAMVAHTVAGYRFAGMLLVFFFTASRMTRVGEKRKRALDPDFKEGGQR 92
           KS+D +    G   M  H  AG+R+  +LLVFF T+S++T+VGE +KR +D +FKEGGQR
Sbjct: 27  KSLDLSGGIAGFLVMTIHFTAGFRYGALLLVFFLTSSKLTKVGEDKKRRVDVEFKEGGQR 86

Query: 93  NWFTFRVEASDFGSDCSRVGECGKSLERQNSYLVHTTLIGRKQVLSNSGXXXXXXXXXXX 152
           NW                                        QVL NSG           
Sbjct: 87  NWV---------------------------------------QVLCNSGIASVLVVIACT 107

Query: 153 XTGGSDRCLDTRESSLVTALIGGVIGHYACCNGDTWSSELGILSKAEPRIITTFKRVRKG 212
            TG  D+CLD+++S +VTALIGG+IGHYACCNGDTWSSELG+LS A+PR+ITTFK V+KG
Sbjct: 108 LTGWKDKCLDSKQSEIVTALIGGIIGHYACCNGDTWSSELGVLSDAQPRLITTFKPVKKG 167

Query: 213 TNGGVTIDGLLAAAAAGFSIXXXXXXXXXXXXQCSSDVFWRQLLVIPLATAAGLCGSLID 272
           TNGGVT  GLLAA AAG ++             C+SDV  +QLLVIPL+  AGLCGSLID
Sbjct: 168 TNGGVTKAGLLAALAAGTTVGLTFLIFGLFTASCASDVALKQLLVIPLSALAGLCGSLID 227

Query: 273 SLLGATLQYSGYCSLRKKVVGVDGPTVTRISGRNILDNNGVNVVSVFLTTLITALACVYI 332
           S+LGAT+Q+SG+CS+R KVVG  GPTV +ISG +ILDNNGVN VS+ LT+ +T++A VYI
Sbjct: 228 SILGATIQFSGFCSVRNKVVGKPGPTVKKISGVDILDNNGVNFVSILLTSFLTSIASVYI 287

Query: 333 F 333
           F
Sbjct: 288 F 288



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.323    0.137    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,723,904
Number of extensions: 211242
Number of successful extensions: 382
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 382
Number of HSP's successfully gapped: 2
Length of query: 333
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 234
Effective length of database: 8,392,385
Effective search space: 1963818090
Effective search space used: 1963818090
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 112 (47.8 bits)