BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0174300 Os01g0174300|AK071324
(311 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G20080.1 | chr5:6782708-6786360 FORWARD LENGTH=329 438 e-123
AT5G17770.1 | chr5:5864543-5866495 REVERSE LENGTH=282 211 5e-55
AT1G37130.1 | chr1:14158617-14161652 FORWARD LENGTH=918 152 3e-37
AT1G77760.1 | chr1:29236005-29239367 REVERSE LENGTH=918 147 1e-35
>AT5G20080.1 | chr5:6782708-6786360 FORWARD LENGTH=329
Length = 328
Score = 438 bits (1126), Expect = e-123, Method: Compositional matrix adjust.
Identities = 203/280 (72%), Positives = 242/280 (86%)
Query: 32 FCASSPPTIALMEEKGEDAAAKVALNPDKWLEFKLQEKATVSHNSQLFRFSFDPSTKLGL 91
+ +S + +++ E+ K ALNPDKWLEFKLQ+ A VSHN+QLFRFSFDPS +LGL
Sbjct: 49 YYLTSGNNLVYLDQAKEETGPKTALNPDKWLEFKLQDTARVSHNTQLFRFSFDPSAELGL 108
Query: 92 DVASCLITRAPIGEEVEGGRKFVIRPYTPISDPDSKGYFDLLIKVYPDGKMSQYFASLKP 151
VASCL+TRAP+G EG K+VIRPYTPISDP++KGYFDLLIKVYPDGKMSQ+FASLKP
Sbjct: 109 HVASCLLTRAPLGYNAEGKTKYVIRPYTPISDPEAKGYFDLLIKVYPDGKMSQHFASLKP 168
Query: 152 GDVVEVKGPIEKLRYSPNMKKQIGMIAGGTGITPMLQVVRAILKNPDDNTQVSLIYANVS 211
GDV+EVKGP+EK +YSPNMKK IGMIAGG+GITPMLQV+ AI+KNP+DNTQ+SL+YANVS
Sbjct: 169 GDVLEVKGPVEKFKYSPNMKKHIGMIAGGSGITPMLQVIDAIVKNPEDNTQISLLYANVS 228
Query: 212 PDDILLKRELDRLASSYPNFKVFYTVDKPSNDWRGGVGYISKDIALKGLPRPGEDSLILV 271
PDDILLK++LD L +++PN K+FYTVD P+ +W+GGVGYISKD+ALKGLP P +D+LILV
Sbjct: 229 PDDILLKQKLDVLQANHPNLKIFYTVDNPTKNWKGGVGYISKDMALKGLPLPTDDTLILV 288
Query: 272 CGPPGMMNHISGDKAKDRSQGELTGILKELGYTAEMVYKF 311
CGPPGMM HISG KA D SQGE+ GILKELGYT EMV+KF
Sbjct: 289 CGPPGMMEHISGGKAPDWSQGEVKGILKELGYTEEMVFKF 328
>AT5G17770.1 | chr5:5864543-5866495 REVERSE LENGTH=282
Length = 281
Score = 211 bits (536), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 111/261 (42%), Positives = 158/261 (60%), Gaps = 20/261 (7%)
Query: 53 KVALNPDKWLEFKLQEKATVSHNSQLFRFSFDPSTK-LGLDVASCLITRAPIGEEVEGGR 111
+V L+P+ + EFKL ++ +SHN F F ST LGL + + R G+ +
Sbjct: 39 RVCLDPENFKEFKLVKRHQLSHNVAKFVFELPTSTSVLGLPIGQHISCRGKDGQGED--- 95
Query: 112 KFVIRPYTPISDPDSKGYFDLLIKVYPDGKMSQYFASLKPGDVVEVKGPIEKLRYSPNMK 171
VI+PYTP + G F+L+IK+YP G+MS +F ++ GD + VKGP + +Y P
Sbjct: 96 --VIKPYTPTTLDSDVGRFELVIKMYPQGRMSHHFREMRVGDHLAVKGPKGRFKYQPGQF 153
Query: 172 KQIGMIAGGTGITPMLQVVRAILKNPDDNTQVSLIYANVSPDDILLKRELDRLASSYP-N 230
+ GM+AGG+GITPM QV RAIL+NP D T+V LIYANV+ DDILLK EL+ L ++YP
Sbjct: 154 RAFGMLAGGSGITPMFQVARAILENPTDKTKVHLIYANVTYDDILLKEELEGLTTNYPEQ 213
Query: 231 FKVFYTVDKPSNDWRGGVGYISKDIALKGLPRPGEDSLILVCGPPGMMNHISGDKAKDRS 290
FK+FY +++P W GGVG++SK++ P P D IL CGPP M ++ +
Sbjct: 214 FKIFYVLNQPPEVWDGGVGFVSKEMIQTHCPAPASDIQILRCGPPPMNKAMAAN------ 267
Query: 291 QGELTGILKELGYTAEMVYKF 311
L+ LGY+ EM ++F
Sbjct: 268 -------LEALGYSPEMQFQF 281
>AT1G37130.1 | chr1:14158617-14161652 FORWARD LENGTH=918
Length = 917
Score = 152 bits (383), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 92/246 (37%), Positives = 137/246 (55%), Gaps = 28/246 (11%)
Query: 56 LNPDKWLEFKLQEKATVSHNSQLFRFSFD-PSTKLGLDVASCLITRAPIGEEVEGGRKFV 114
+NP + +L EK ++SH+ + FRF+ LGL V + A I + K
Sbjct: 657 VNPRAKVPVQLVEKTSISHDVRKFRFALPVEDMVLGLPVGKHIFLCATIND------KLC 710
Query: 115 IRPYTPISDPDSKGYFDLLIKVY--------PDGK-MSQYFASLKPGDVVEVKGPIEKLR 165
+R YTP S D GYF+L++K+Y P+G MSQY SL G +E+KGP+ +
Sbjct: 711 LRAYTPSSTVDVVGYFELVVKIYFGGVHPRFPNGGLMSQYLDSLPIGSTLEIKGPLGHVE 770
Query: 166 Y----------SPNMKKQIGMIAGGTGITPMLQVVRAILKNPDDNTQVSLIYANVSPDDI 215
Y P ++ M+AGGTGITP+ Q+++AILK+P+D T++ +IYAN + +DI
Sbjct: 771 YLGKGSFTVHGKPKFADKLAMLAGGTGITPVYQIIQAILKDPEDETEMYVIYANRTEEDI 830
Query: 216 LLKRELDRLASSYPN-FKVFYTVDKPSNDWRGGVGYISKDIALKGLPRPGEDS-LILVCG 273
LL+ ELD A YP+ KV+Y V+ W G+IS+ I + +P + S L + CG
Sbjct: 831 LLREELDGWAEQYPDRLKVWYVVESAKEGWAYSTGFISEAIMREHIPDGLDGSALAMACG 890
Query: 274 PPGMMN 279
PP M+
Sbjct: 891 PPPMIQ 896
>AT1G77760.1 | chr1:29236005-29239367 REVERSE LENGTH=918
Length = 917
Score = 147 bits (370), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 85/245 (34%), Positives = 140/245 (57%), Gaps = 28/245 (11%)
Query: 56 LNPDKWLEFKLQEKATVSHNSQLFRFSF-DPSTKLGLDVASCLITRAPIGEEVEGGRKFV 114
+NP + + +L EK ++SH+ + FRF+ +LGL V + A I + K
Sbjct: 657 VNPREKIPVRLIEKTSISHDVRKFRFALPSEDQQLGLPVGKHVFVCANIND------KLC 710
Query: 115 IRPYTPISDPDSKGYFDLLIKVY--------PDGK-MSQYFASLKPGDVVEVKGPIEKLR 165
+R YTP S D+ G+ DL++KVY P+G MSQ+ SL G ++++KGP+ +
Sbjct: 711 LRAYTPTSAIDAVGHIDLVVKVYFKDVHPRFPNGGLMSQHLDSLPIGSMIDIKGPLGHIE 770
Query: 166 YS----------PNMKKQIGMIAGGTGITPMLQVVRAILKNPDDNTQVSLIYANVSPDDI 215
Y P K++ M+AGGTGITP+ Q++++IL +P+D T++ ++YAN + DDI
Sbjct: 771 YKGKGNFLVSGKPKFAKKLAMLAGGTGITPIYQIIQSILSDPEDETEMYVVYANRTEDDI 830
Query: 216 LLKRELDRLASSYPN-FKVFYTVDKPSNDWRGGVGYISKDIALKGLPRPGE-DSLILVCG 273
L++ EL+ AS + K++Y V+ W G+I++ + + +P E +SL L CG
Sbjct: 831 LVREELEGWASKHKERLKIWYVVEIAKEGWSYSTGFITEAVLREHIPEGLEGESLALACG 890
Query: 274 PPGMM 278
PP M+
Sbjct: 891 PPPMI 895
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.138 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,012,826
Number of extensions: 305345
Number of successful extensions: 718
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 711
Number of HSP's successfully gapped: 4
Length of query: 311
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 213
Effective length of database: 8,419,801
Effective search space: 1793417613
Effective search space used: 1793417613
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 111 (47.4 bits)