BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0174100 Os01g0174100|AK120465
(111 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G80180.1 | chr1:30157057-30157473 REVERSE LENGTH=139 56 4e-09
AT1G15400.3 | chr1:5296019-5296824 REVERSE LENGTH=149 55 7e-09
AT5G20100.1 | chr5:6790153-6790494 FORWARD LENGTH=114 54 1e-08
>AT1G80180.1 | chr1:30157057-30157473 REVERSE LENGTH=139
Length = 138
Score = 55.8 bits (133), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 55/123 (44%), Gaps = 28/123 (22%)
Query: 1 MAALQRSSQTFRRSGSSGLVWDERLMLDGHSERDQEDGALELRHSRSVGLI--------- 51
MA LQRS+ +FRR GSSG+VWD+RL+ + + + L+ LI
Sbjct: 1 MAGLQRSTISFRRQGSSGIVWDDRLIAELSQQAANDRKGETLQQDEQAKLITSEVQDQTT 60
Query: 52 ---------------GLQRRHGDGAGHTRCNNSQAFHTRRVPPAQDPPSPKVPGCIFCGI 96
G++R +G G R + +T RV PA DPPSP++ C
Sbjct: 61 KPIAGEGLKPIRTDGGMERSRSNGGGAIRHHR----NTGRVSPAVDPPSPRLSAFGCCSA 116
Query: 97 FRK 99
F K
Sbjct: 117 FGK 119
>AT1G15400.3 | chr1:5296019-5296824 REVERSE LENGTH=149
Length = 148
Score = 55.1 bits (131), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 62/125 (49%), Gaps = 30/125 (24%)
Query: 1 MAALQRSSQTFRRSGSSGLVWDERLMLD----------GHSERDQE-------------- 36
M LQRS+ +FRR GSSG+V+D+RL+ + S+RD++
Sbjct: 1 MEGLQRSTISFRRQGSSGIVFDDRLIAELNKSGNNEQKDESQRDEQPKPMSESSEQVKPI 60
Query: 37 DGALELRHSRSVGLI--GLQRRHGDGAGHTRCNNSQAFHTRRVPPAQDPPSPKVPGCIFC 94
D +LR ++ G G++R +G G R + + T RV PA DPPSP++ C C
Sbjct: 61 DEKDKLRPIKTGGGAPGGIERSRSNGGGAQRHHRT----TGRVSPAVDPPSPRISSCGCC 116
Query: 95 GIFRK 99
F K
Sbjct: 117 SAFGK 121
>AT5G20100.1 | chr5:6790153-6790494 FORWARD LENGTH=114
Length = 113
Score = 54.3 bits (129), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 47/99 (47%), Gaps = 10/99 (10%)
Query: 3 ALQRSSQTFRRSGSSGLVWDERLMLDGHSERD--QEDGALELRHSRSVGLIGLQRRHGDG 60
ALQRS+ +FRR GSSGL+W++R L G D QED + R +R
Sbjct: 2 ALQRSTASFRRQGSSGLIWNDRF-LSGEIRNDERQEDRCNDHRDGSMAATTATVKRSASD 60
Query: 61 AGHTRCNNSQAFHTRRVPPAQDPPSPKVP--GCIFCGIF 97
G + PA DPPSPK+ GC FC +F
Sbjct: 61 GGCG-----HGGRLGELSPALDPPSPKISAVGCGFCSLF 94
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.137 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,774,425
Number of extensions: 113154
Number of successful extensions: 330
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 326
Number of HSP's successfully gapped: 3
Length of query: 111
Length of database: 11,106,569
Length adjustment: 80
Effective length of query: 31
Effective length of database: 8,913,289
Effective search space: 276311959
Effective search space used: 276311959
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 104 (44.7 bits)