BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0172300 Os01g0172300|AK106113
(186 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G25360.1 | chr5:8799934-8802333 REVERSE LENGTH=170 118 2e-27
AT4G32342.1 | chr4:15615184-15616200 REVERSE LENGTH=162 112 1e-25
AT1G15350.2 | chr1:5278481-5279486 REVERSE LENGTH=155 110 3e-25
AT3G15770.1 | chr3:5340243-5341216 FORWARD LENGTH=163 110 4e-25
AT5G03440.1 | chr5:857179-857898 REVERSE LENGTH=99 84 5e-17
AT3G54880.1 | chr3:20337078-20337786 REVERSE LENGTH=113 80 7e-16
>AT5G25360.1 | chr5:8799934-8802333 REVERSE LENGTH=170
Length = 169
Score = 118 bits (295), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 59/119 (49%), Positives = 76/119 (63%), Gaps = 13/119 (10%)
Query: 80 TIGDELWSTTTIEVEQSWALDQQGV------------GSSQGPTEFVNHGLVLWKEIRKD 127
++ ++ WST+T E++ S Q+ + S+ PTEFVNHGL LW + R+
Sbjct: 52 SVSEDFWSTSTCEMDNSTLQSQRSMSSISFTNNTSTSASTSNPTEFVNHGLNLWNQTRQQ 111
Query: 128 WTAKTRQIPETKQIREPILSWNAAYESLLGSNKPFHQPIPLHEMVDFLVDIWEQEGLYD 186
W A + K +REP +SWNA YESLLG NK F +PIPL EMVDFLVD+WEQEGLYD
Sbjct: 112 WLANGTSQKKAK-VREPTISWNATYESLLGMNKRFSRPIPLPEMVDFLVDVWEQEGLYD 169
>AT4G32342.1 | chr4:15615184-15616200 REVERSE LENGTH=162
Length = 161
Score = 112 bits (280), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 66/160 (41%), Positives = 89/160 (55%), Gaps = 18/160 (11%)
Query: 41 LLSSACLFICSGGCFGCCDKAVR---HVGQLSKSLITP----DQNYTIGDELWSTTTIEV 93
L S+ I S CFGCC++ R V + SK L ++ D+ WST+T ++
Sbjct: 4 LRSNCKTLINSINCFGCCNRERRLVVEVDEPSKGLKIQGKIVKKDSASSDDFWSTSTCDM 63
Query: 94 EQSWALDQQGVG-------SSQGPTEFVNHGLVLWKEIRKDWT-AKTRQIPETKQIREPI 145
+ + + Q S+ TEFVNHGL+LW R+ W TRQ + EP
Sbjct: 64 DHNITIQSQSSNPPFDPQCSTSNSTEFVNHGLILWNHTRQQWRECLTRQ---QCLVPEPA 120
Query: 146 LSWNAAYESLLGSNKPFHQPIPLHEMVDFLVDIWEQEGLY 185
+SWN+ Y+SLL +NK F QPIPL EMV FLVD+WE+EGLY
Sbjct: 121 ISWNSTYDSLLSTNKLFPQPIPLKEMVHFLVDVWEEEGLY 160
>AT1G15350.2 | chr1:5278481-5279486 REVERSE LENGTH=155
Length = 154
Score = 110 bits (276), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 62/153 (40%), Positives = 84/153 (54%), Gaps = 18/153 (11%)
Query: 52 GGCFGCCDKAVRHVGQL----SKSLITPDQNYTIGDELWSTTTIEVEQ------------ 95
GGC GC + L S S+ P + ++ ++ WST+T++++
Sbjct: 2 GGCVGCYREHRSTAASLKDPPSNSIARPCKKPSVSEDFWSTSTVDMDNITFPSQGSLSSS 61
Query: 96 SWALDQQGVG-SSQGPTEFVNHGLVLWKEIRKDWTAKTRQIPETKQIREPILSWNAA-YE 153
+ D Q +S P E+VN GL+LW + R+ W K + + L+WN A Y+
Sbjct: 62 NQTFDSQSAARNSNAPPEYVNQGLLLWNQTRERWVGKDKPNNPVDHNQGAKLNWNTATYD 121
Query: 154 SLLGSNKPFHQPIPLHEMVDFLVDIWEQEGLYD 186
SLLGSNK F QPIPL EMVDFLVDIWEQEGLYD
Sbjct: 122 SLLGSNKLFPQPIPLTEMVDFLVDIWEQEGLYD 154
>AT3G15770.1 | chr3:5340243-5341216 FORWARD LENGTH=163
Length = 162
Score = 110 bits (275), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 56/116 (48%), Positives = 71/116 (61%), Gaps = 13/116 (11%)
Query: 83 DELWSTTTIEVEQS------------WALDQQGVGSSQG-PTEFVNHGLVLWKEIRKDWT 129
++ W+ TT+++E + +D QG GSS P EFVNHGLVLW + R+ W
Sbjct: 46 EDFWTNTTLDMESNAHGSVSSISTTNLTIDSQGCGSSSNEPAEFVNHGLVLWNQTRQQWV 105
Query: 130 AKTRQIPETKQIREPILSWNAAYESLLGSNKPFHQPIPLHEMVDFLVDIWEQEGLY 185
R REPIL+ N YESLLGSNK F +PIPL EMV FLV++WE+EGLY
Sbjct: 106 GDKRSESRKSVGREPILNENVTYESLLGSNKRFPRPIPLDEMVQFLVEVWEEEGLY 161
>AT5G03440.1 | chr5:857179-857898 REVERSE LENGTH=99
Length = 98
Score = 83.6 bits (205), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 38/78 (48%), Positives = 54/78 (69%), Gaps = 9/78 (11%)
Query: 113 FVNHGLVLWKEIRKDW----TAKTRQIPETKQIREPILSWNAAYESLLGSNKPFHQPIPL 168
FVNH + W+E+RK W + +T ++P+ EP++ +NA YE LL SN PF++PIPL
Sbjct: 26 FVNHAEIAWQEMRKKWVGDPSNRTSEMPD-----EPVIGFNATYEDLLTSNTPFNKPIPL 80
Query: 169 HEMVDFLVDIWEQEGLYD 186
EMVDFL DIW +GL++
Sbjct: 81 AEMVDFLFDIWHGDGLFE 98
>AT3G54880.1 | chr3:20337078-20337786 REVERSE LENGTH=113
Length = 112
Score = 80.1 bits (196), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 54/82 (65%), Gaps = 3/82 (3%)
Query: 106 SSQGPTEFVNHGLVLWKEIRKDWTA-KTRQIPETKQIREPILSWNAAYESLLGSNKPFHQ 164
+S+ VNHG +W+E R+ W ++RQ T ++ I+SW+ YE LL +++PF +
Sbjct: 33 NSENTLTLVNHGAKMWQENREKWVGDQSRQRKNT--AKDQIISWSTTYEDLLSTHEPFSE 90
Query: 165 PIPLHEMVDFLVDIWEQEGLYD 186
IPL EMVDFLVDIW EGLYD
Sbjct: 91 SIPLPEMVDFLVDIWYDEGLYD 112
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.135 0.447
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,242,512
Number of extensions: 173302
Number of successful extensions: 407
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 396
Number of HSP's successfully gapped: 6
Length of query: 186
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 93
Effective length of database: 8,556,881
Effective search space: 795789933
Effective search space used: 795789933
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 108 (46.2 bits)