BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0171800 Os01g0171800|AK067987
(338 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G62960.1 | chr5:25269444-25271533 FORWARD LENGTH=348 331 4e-91
AT1G10660.2 | chr1:3533009-3534781 FORWARD LENGTH=321 300 5e-82
AT3G27770.1 | chr3:10285818-10287474 REVERSE LENGTH=316 271 3e-73
AT1G70505.1 | chr1:26570647-26572463 FORWARD LENGTH=359 197 6e-51
AT2G47115.1 | chr2:19345376-19346864 REVERSE LENGTH=301 188 4e-48
>AT5G62960.1 | chr5:25269444-25271533 FORWARD LENGTH=348
Length = 347
Score = 331 bits (848), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 166/334 (49%), Positives = 214/334 (64%), Gaps = 13/334 (3%)
Query: 2 PSSTMAVDTTASEYWLNWRFMLCAVWVYSCMVLACFLIWKYEGPXXXXXXXXXXXXXXXA 61
PS+T +TT S YW NWR M+C +W+ V+ FLI+KYEG
Sbjct: 23 PSTT--ANTTESSYWFNWRVMICCIWMAIATVITAFLIFKYEG-----FRRKRSDVGEVD 75
Query: 62 RPPRAASGVVYLEDCWKPCLEQIHPGWLLAFRVVSFFILASLLAXXXXXXGWSVFLYYTQ 121
+ SG VY ++ W+PCL IHP WLLAFRVV+FF+L +L G ++F YYTQ
Sbjct: 76 GGEKEWSGNVYEDETWRPCLRNIHPAWLLAFRVVAFFVLLVMLIVIGLVDGPTIFFYYTQ 135
Query: 122 WTFLLVTLYFGLGSVLSIYGCYQYSYKNGDNRSGADHGTYIIAPAGESVYDQSIKNPCYS 181
WTF L+TLYFGLGS+LS++GCYQY + R+ D I A E + N
Sbjct: 136 WTFGLITLYFGLGSLLSLHGCYQY-----NKRAAGDRVDSIEAIDSERARSKGADNTIQQ 190
Query: 182 KMHGGKEIAGFWGYLFQIMFQTNAGAVMITDLVFWFILYPFLAYNQYDMNFLLIGTHSIN 241
+ AGFWGY+FQI+FQ NAGAV++TD VFWFI+ PFL + Y +N L+I HS+N
Sbjct: 191 SQYSSNP-AGFWGYVFQIIFQMNAGAVLLTDCVFWFIIVPFLEIHDYSLNVLVINMHSLN 249
Query: 242 VVFMIGDTAMNSLRFPWFRIAYFLLWTGAFVNVQWLIHASISIWWPYPFLDLAFPKAPVW 301
+F++GD A+NSL FP FRIAYF WT A+V QW +H+ + IWWPYPFLDL+ AP+W
Sbjct: 250 AIFLLGDAALNSLSFPCFRIAYFFFWTIAYVIFQWALHSLVHIWWPYPFLDLSSHYAPLW 309
Query: 302 YLVVAVMHFPCYALFALVMRLKQSLLERWFPQSY 335
Y VAVMH PCY FAL+++LK LL+RWFP+SY
Sbjct: 310 YFSVAVMHLPCYGAFALLVKLKHRLLQRWFPESY 343
>AT1G10660.2 | chr1:3533009-3534781 FORWARD LENGTH=321
Length = 320
Score = 300 bits (769), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 161/332 (48%), Positives = 212/332 (63%), Gaps = 24/332 (7%)
Query: 6 MAVDTTASEYWLNWRFMLCAVWVYSCMVLACFLIWKYEGPXXXXXXXXXXXXXXXARPPR 65
MA DTTAS YWLNWR +LCA+ + + +VLA LIWKYEG
Sbjct: 1 MAADTTASSYWLNWRVLLCALILLAPIVLAAVLIWKYEGKRRRQRESQREL--------- 51
Query: 66 AASGVVYLEDCWKPCLEQIHPGWLLAFRVVSFFILASLLAXXXXXXGWSVFLYYTQWTFL 125
G ++ ++ W C ++IHP WLLAFRV SF + +LL G +F +YTQWTF
Sbjct: 52 --PGTLFQDEAWTTCFKRIHPLWLLAFRVFSFVAMLTLLISNVVRDGAGIFYFYTQWTFT 109
Query: 126 LVTLYFGLGSVLSIYGCYQYSYKNGDNRSG------ADHGTYI--IAPAGESVYDQSIKN 177
LVTLYFG SVLS+YGC Y+ + N + GTY IA GE ++
Sbjct: 110 LVTLYFGYASVLSVYGCCIYNKEASGNMESYTSIGDTEQGTYRPPIALDGEGNTSKASNR 169
Query: 178 PCYSKMHGGKEIAGFWGYLFQIMFQTNAGAVMITDLVFWFILYPFLAYNQYDMNFLLIGT 237
P + ++ AGFW Y+FQI+FQT AGAV++TD+VFW I+YPF Y ++FL +
Sbjct: 170 PSEAP---ARKTAGFWVYIFQILFQTCAGAVVLTDIVFWAIIYPFT--KGYKLSFLDVCM 224
Query: 238 HSINVVFMIGDTAMNSLRFPWFRIAYFLLWTGAFVNVQWLIHASISIWWPYPFLDLAFPK 297
HS+N VF++GDT++NSLRFP FRIAYF+LW+ FV QW+IHA ++WWPY FLDL+ P
Sbjct: 225 HSLNAVFLLGDTSLNSLRFPLFRIAYFVLWSCIFVAYQWIIHAVKNLWWPYQFLDLSSPY 284
Query: 298 APVWYLVVAVMHFPCYALFALVMRLKQSLLER 329
AP+WYL VAVMH PC+A+FALV++LK LL++
Sbjct: 285 APLWYLGVAVMHIPCFAVFALVIKLKNYLLQQ 316
>AT3G27770.1 | chr3:10285818-10287474 REVERSE LENGTH=316
Length = 315
Score = 271 bits (693), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 136/325 (41%), Positives = 204/325 (62%), Gaps = 18/325 (5%)
Query: 7 AVDTTASEYWLNWRFMLCAVWVYSCMVLACFLIWKYEGPXXXXXXXXXXXXXXXARPPRA 66
++ T+ +YW NWR +LCA+WV M+++ ++WKYE +P
Sbjct: 6 VLEFTSFDYWFNWRVLLCAIWVIVPMIVSLLVLWKYEDSSVQ------------TQPSLN 53
Query: 67 ASGVVYLEDCWKPCLEQIHPGWLLAFRVVSF-FILASLLAXXXXXXGWSVFLYYTQWTFL 125
+ V+ ++D W+PC E+IHPGWLL FRV+ F F+LA+ +A GW ++ YYTQWTF
Sbjct: 54 GNDVLCIDDVWRPCFERIHPGWLLGFRVLGFCFLLANNIARFANR-GWRIYYYYTQWTFT 112
Query: 126 LVTLYFGLGSVLSIYGCYQYSYKNGDNRSGADHGTYIIAPAG--ESVYDQSIKNPCYSKM 183
L+ +YFG+GS+LSIYGC QY K G+ AD I A G + D +
Sbjct: 113 LIAIYFGMGSLLSIYGCLQYK-KQGNTGLIADQ-VGIDAENGFRSPLIDGDNMVSFEKRK 170
Query: 184 HGGKEIAGFWGYLFQIMFQTNAGAVMITDLVFWFILYPFLAYNQYDMNFLLIGTHSINVV 243
G E + +LFQI++Q AGA ++TD ++W +++PFL+ Y+M+F+ + H+ N+V
Sbjct: 171 TSGSEALKSYVHLFQIIYQMGAGAAVLTDSIYWTVIFPFLSLQDYEMSFMTVNLHTSNLV 230
Query: 244 FMIGDTAMNSLRFPWFRIAYFLLWTGAFVNVQWLIHASISIWWPYPFLDLAFPKAPVWYL 303
++ DT +N L+FP FR +YF+LWTG FV QW++H IS+ WPYPFL+L+ APVWYL
Sbjct: 231 LLLIDTFLNRLKFPLFRFSYFILWTGCFVLFQWILHMFISVGWPYPFLNLSLDMAPVWYL 290
Query: 304 VVAVMHFPCYALFALVMRLKQSLLE 328
+VA++H P Y LFAL++++K L+
Sbjct: 291 LVALLHLPSYGLFALIVKIKYKLIS 315
>AT1G70505.1 | chr1:26570647-26572463 FORWARD LENGTH=359
Length = 358
Score = 197 bits (502), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 103/257 (40%), Positives = 152/257 (59%), Gaps = 14/257 (5%)
Query: 5 TMAVDTTASEYWLNWRFMLCAVWVYSCMVLACFLIWKYEGPXXXXXXXXXXXXXXXARPP 64
TM +T YWLNWRF +CA++V + + L+ +LIW+YEGP +
Sbjct: 26 TMTSETNIPSYWLNWRFFVCAIFVLTSLFLSSYLIWRYEGPIKRKKRGDDQ-----SLEL 80
Query: 65 RAASGVVYLEDCWKPCLEQIHPGWLLAFRVVSFFILASLLAXXXXXXGWSVFLYYTQWTF 124
+GVVY ++ W +++IHP WLL FRV F +L L++ G +F++YTQWTF
Sbjct: 81 EQLTGVVYDDESWNTSVKEIHPNWLLGFRVFGFVVLLGLISGNAIADGTGIFIFYTQWTF 140
Query: 125 LLVTLYFGLGSVLSIYGCYQYSYKNGDNRSG---ADHGTYIIAPAGESVYDQSIKNPCYS 181
LVT+YFGLGS++SIY S NG+NR + GTY P G + K+
Sbjct: 141 TLVTIYFGLGSLVSIY--RFRSPDNGENRVSIVDEEQGTY--RPPGNAENSNVFKSSSGH 196
Query: 182 KMHG--GKEIAGFWGYLFQIMFQTNAGAVMITDLVFWFILYPFLAYNQYDMNFLLIGTHS 239
+++A GY+ QI+FQT AGAV++TD VFWFI+YPFL ++++F ++ HS
Sbjct: 197 DRENMSTRQVATTLGYIHQILFQTCAGAVLLTDGVFWFIIYPFLTAKDFNLDFFIVIMHS 256
Query: 240 INVVFMIGDTAMNSLRF 256
+N +F++G+T +NSL F
Sbjct: 257 VNAIFLLGETFLNSLGF 273
>AT2G47115.1 | chr2:19345376-19346864 REVERSE LENGTH=301
Length = 300
Score = 188 bits (477), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 103/258 (39%), Positives = 152/258 (58%), Gaps = 20/258 (7%)
Query: 77 WKPCLEQIHPGWLLAFRVVSFFILASLLAXXXXXXGWSVFLYYTQWTFLLVTLYFGLGSV 136
W C ++HPGWLL R SF +A+LLA S+F+YYT+WTF+LV +YF +G V
Sbjct: 60 WASCWTRLHPGWLLFTRSTSFLSMAALLAWDVIKWDASIFVYYTEWTFMLVIIYFAMGIV 119
Query: 137 LSIYGCYQYSYKNGDNRSGADHGTYIIAPAGESVYDQSIKNPCYSKMHGGKEIAGFWGYL 196
S+YGC H + E V + + + ++ E+ G
Sbjct: 120 ASVYGCLI-------------HLKELTLETDEDVVVEKVGDEFRRRL----EVC---GCF 159
Query: 197 FQIMFQTNAGAVMITDLVFWFILYPFLAYNQYDMNFLLIGTHSINVVFMIGDTAMNSLRF 256
Q +FQT+AGAV++TD+VFW ++ PFL+ ++ +N L I H+ N F++ +T +NSL F
Sbjct: 160 MQTIFQTSAGAVVLTDIVFWLVIVPFLSTTRFGLNTLTICMHTANAGFLLLETLLNSLPF 219
Query: 257 PWFRIAYFLLWTGAFVNVQWLIHASISIWWPYPFLDLAFPKAPVWYLVVAVMHFPCYALF 316
PWFR+ YF+LW+ +V QW+IHA WWPYPFL+L P AP+WYL +A++H PCY +
Sbjct: 220 PWFRMGYFVLWSCLYVIFQWIIHACGFTWWPYPFLELDKPWAPIWYLCMAIVHIPCYGAY 279
Query: 317 ALVMRLKQSLLERWFPQS 334
A +++ K S FP +
Sbjct: 280 AAIVKAKNSCFPYLFPNA 297
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.330 0.142 0.504
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,226,881
Number of extensions: 280676
Number of successful extensions: 643
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 633
Number of HSP's successfully gapped: 5
Length of query: 338
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 239
Effective length of database: 8,392,385
Effective search space: 2005780015
Effective search space used: 2005780015
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 112 (47.8 bits)