BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0169900 Os01g0169900|AK121293
         (580 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G01560.1  | chr3:219884-221707 FORWARD LENGTH=512              158   6e-39
AT5G14540.1  | chr5:4687333-4689624 REVERSE LENGTH=548            154   2e-37
AT4G28300.1  | chr4:14014860-14016823 FORWARD LENGTH=497           89   7e-18

>AT3G01560.1 | chr3:219884-221707 FORWARD LENGTH=512
          Length = 511

 Score =  158 bits (400), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 96/230 (41%), Positives = 133/230 (57%), Gaps = 25/230 (10%)

Query: 1   MNTSQFMDKQIXXXXXXXXXXXXXXXXXXXPELLDLMSPNPQEEGEDRLRRRHSSSNG-- 58
           MNT QFMDKQI                    + +DLM+     +G+D  +++    NG  
Sbjct: 1   MNTCQFMDKQIMDLSSSSSLPST--------DFIDLMN---NHDGDDHQKKQVIGDNGLD 49

Query: 59  -SADDVLPSYDFQPIRTTXXXXXXXXX------XXXXXWGSLDSGS-KAASASYNLKSAG 110
              + ++PSYDF PIR T                    W + D       S + N  S  
Sbjct: 50  SKKEVIVPSYDFHPIRPTTAARLSHSALDLAGSTTRVNWSASDYKPVSTTSPNTNFGSLD 109

Query: 111 VLEPHVLKKVSHEEDRSNFGTVTMADI-DRTMKKYSDNLLHALEGVSSRLSQLEGRTHHL 169
            +EP    K+  ++ ++ F T  M++I DRTMKK++D LLH +EGVS+RLSQLE RTH+L
Sbjct: 110 SIEP---SKLVPDKGQNVFNTTIMSEIIDRTMKKHTDTLLHVMEGVSARLSQLETRTHNL 166

Query: 170 ENSVDDLKITIGNYNGSTDGKLRQLENMLREVQAGVQILRDKQEIVETQL 219
           EN VDDLK+++ N +GSTDGK+RQL+N+L EVQ+GVQ+L+DKQEI+E QL
Sbjct: 167 ENLVDDLKVSVDNSHGSTDGKMRQLKNILVEVQSGVQLLKDKQEILEAQL 216




 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 34/43 (79%), Positives = 40/43 (93%)

Query: 525 DDVVEKVATMGFSREQVRATVRRLTENGQNVDLNVVLDKLMND 567
           DDV+++V TMGF R+QVRATVR+LTENGQ VDLNVVLDKLMN+
Sbjct: 457 DDVIDRVTTMGFPRDQVRATVRKLTENGQAVDLNVVLDKLMNE 499



>AT5G14540.1 | chr5:4687333-4689624 REVERSE LENGTH=548
          Length = 547

 Score =  154 bits (388), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 88/206 (42%), Positives = 123/206 (59%), Gaps = 15/206 (7%)

Query: 32  ELLDLM---SPNPQEEGEDRLRRRHSSSNGSADDVLPSYDFQPIRTTXXX---------X 79
           +++DLM   S N Q+      R   +      + + PSYDFQP+R               
Sbjct: 16  QIMDLMNDNSNNSQDGDHQNYRVGDNGLESKKEAIFPSYDFQPMRPNASAGLSHHALDLA 75

Query: 80  XXXXXXXXXXWGSLDSGSKAASASYNLKSAGVLEPHVLKKVSHEEDRSNFGTVTMADIDR 139
                     W + D    +AS++ +  S   LEP    K+  E+DR++  +  ++ IDR
Sbjct: 76  GSVNSTAARVWDASDPKPVSASSARSYGSMDSLEP---SKLFAEKDRNSPESAIISAIDR 132

Query: 140 TMKKYSDNLLHALEGVSSRLSQLEGRTHHLENSVDDLKITIGNYNGSTDGKLRQLENMLR 199
           TMK ++D LLH +EGVS+RL+QLE RT  LEN VDD+K+++GN +G TDGKLRQLEN++ 
Sbjct: 133 TMKAHADKLLHVMEGVSARLTQLETRTRDLENLVDDVKVSVGNSHGKTDGKLRQLENIML 192

Query: 200 EVQAGVQILRDKQEIVETQLHLAKLQ 225
           EVQ GVQ+L+DKQEIVE QL L+KLQ
Sbjct: 193 EVQNGVQLLKDKQEIVEAQLQLSKLQ 218




 Score = 83.6 bits (205), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 48/102 (47%), Positives = 57/102 (55%), Gaps = 17/102 (16%)

Query: 495 YGRLPTAQILPQAVPIXXX----------XXXXXXXXXXXDDVVEKVATMGFSREQVRAT 544
           Y +LP A+ LPQ +P+                        DDV++KV +MGF R+QVR T
Sbjct: 444 YPQLPMARPLPQGLPMASAISSGGSGGGSDSPRSGNRAPVDDVIDKVVSMGFPRDQVRGT 503

Query: 545 VRRLTENGQNVDLNVVLDKLMN-------DSDVQQPQKGWFG 579
           VR LTENGQ VDLNVVLDKLMN           QQP +GWFG
Sbjct: 504 VRTLTENGQAVDLNVVLDKLMNGDRGAMMQQQQQQPPRGWFG 545



>AT4G28300.1 | chr4:14014860-14016823 FORWARD LENGTH=497
          Length = 496

 Score = 89.0 bits (219), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 43/89 (48%), Positives = 64/89 (71%)

Query: 137 IDRTMKKYSDNLLHALEGVSSRLSQLEGRTHHLENSVDDLKITIGNYNGSTDGKLRQLEN 196
           ++RTMK Y+DN++  LEG+SSRLSQLE   ++L+ ++ +++  + + +   D KLR L+ 
Sbjct: 85  VERTMKMYADNMMRFLEGLSSRLSQLELYCYNLDKTIGEMRSELTHAHEDADVKLRSLDK 144

Query: 197 MLREVQAGVQILRDKQEIVETQLHLAKLQ 225
            L+EV   VQILRDKQE+ +TQ  LAKLQ
Sbjct: 145 HLQEVHRSVQILRDKQELADTQKELAKLQ 173



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.311    0.128    0.363 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,156,163
Number of extensions: 218690
Number of successful extensions: 567
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 562
Number of HSP's successfully gapped: 5
Length of query: 580
Length of database: 11,106,569
Length adjustment: 104
Effective length of query: 476
Effective length of database: 8,255,305
Effective search space: 3929525180
Effective search space used: 3929525180
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 114 (48.5 bits)