BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0169800 Os01g0169800|AK061054
(214 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G24670.1 | chr4:12727940-12730694 REVERSE LENGTH=441 223 7e-59
AT1G70560.1 | chr1:26604894-26607319 FORWARD LENGTH=392 211 2e-55
AT1G23320.1 | chr1:8273423-8275350 REVERSE LENGTH=389 211 2e-55
AT1G34040.1 | chr1:12374433-12376179 FORWARD LENGTH=458 167 4e-42
AT1G34060.1 | chr1:12396561-12398299 REVERSE LENGTH=464 164 2e-41
>AT4G24670.1 | chr4:12727940-12730694 REVERSE LENGTH=441
Length = 440
Score = 223 bits (567), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 114/208 (54%), Positives = 136/208 (65%), Gaps = 11/208 (5%)
Query: 6 GRTVHDLAYYWPQYTPITKRASHDIMLFTVSKSTGHAGTRIGWALVKDRAIARKMTKFVE 65
G +HDLAYYWPQYTPIT A HD+MLFT SKSTGHAG RIGWALVKDR ARKM +++E
Sbjct: 237 GILIHDLAYYWPQYTPITSPADHDVMLFTASKSTGHAGIRIGWALVKDRETARKMIEYIE 296
Query: 66 LNTIGVSKDSQMRAAKVLAAVSDGYERRPEQTKETMTTPLRLFDFGRRKMVERWSMLRAA 125
LNTIGVSKDSQ+R AKVL VSD T FD M ERW +L+ A
Sbjct: 297 LNTIGVSKDSQLRVAKVLKVVSDSCGN---------VTGKSFFDHSYDAMYERWKLLKQA 347
Query: 126 AAASGIFSLPEETSGFCNFTKETAATNPAFAWLRCDREDVEDCAGFLRGH-KILTRSGAQ 184
A + FS+P+ S CNF PAFAW +C+ E + DC FLR KILT+SG
Sbjct: 348 AKDTKRFSVPDFVSQRCNFFGRVFEPQPAFAWFKCE-EGIVDCEKFLREEKKILTKSGKY 406
Query: 185 FGADARYVRVSMLDRDDAFDIFINRLSS 212
FG + VR+SMLDRD F+IF++R++S
Sbjct: 407 FGDELSNVRISMLDRDTNFNIFLHRITS 434
>AT1G70560.1 | chr1:26604894-26607319 FORWARD LENGTH=392
Length = 391
Score = 211 bits (538), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 97/214 (45%), Positives = 140/214 (65%), Gaps = 10/214 (4%)
Query: 1 PKTGNGRTVHDLAYYWPQYTPITKRASHDIMLFTVSKSTGHAGTRIGWALVKDRAIARKM 60
P + +HD AYYWP YTPIT+R HDIMLFT SK TGHAG+RIGWALVKD+ +A+KM
Sbjct: 181 PDDDEAKVIHDFAYYWPHYTPITRRQDHDIMLFTFSKITGHAGSRIGWALVKDKEVAKKM 240
Query: 61 TKFVELNTIGVSKDSQMRAAKVLAAVSDGYERRPEQTKETMTTPLRLFDFGRRKMVERWS 120
+++ +N+IGVSK+SQ+R AK+L + ++T ++ + F +GR M RW
Sbjct: 241 VEYIIVNSIGVSKESQVRTAKILNVL--------KETCKSESESENFFKYGREMMKNRWE 292
Query: 121 MLRAAAAASGIFSLPEETSGFCNFTKETAATNPAFAWLRCDREDVEDCAGFLRGHKILTR 180
LR S F+LP+ FCN+ ++ + PAFAWL E D LR HK+++R
Sbjct: 293 KLREVVKESDAFTLPKYPEAFCNYFGKSLESYPAFAWLGTKEET--DLVSELRRHKVMSR 350
Query: 181 SGAQFGADARYVRVSMLDRDDAFDIFINRLSSLK 214
+G + G+D ++VRVSML R+D F++F+ RL+++K
Sbjct: 351 AGERCGSDKKHVRVSMLSREDVFNVFLERLANMK 384
>AT1G23320.1 | chr1:8273423-8275350 REVERSE LENGTH=389
Length = 388
Score = 211 bits (537), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 103/209 (49%), Positives = 132/209 (63%), Gaps = 12/209 (5%)
Query: 6 GRTVHDLAYYWPQYTPITKRASHDIMLFTVSKSTGHAGTRIGWALVKDRAIARKMTKFVE 65
G+ +HDLAYYWP YTPIT+R HD+MLFT SK TGHAG+RIGWALVKD +A+KM ++
Sbjct: 185 GKVIHDLAYYWPHYTPITRRQDHDLMLFTFSKITGHAGSRIGWALVKDIEVAKKMVHYLT 244
Query: 66 LNTIGVSKDSQMRAAKVLAAVSDGYERRPEQTKETMTTPLRLFDFGRRKMVERWSMLRAA 125
+N+IGVSK+SQ RA +L E TK T F++G KM RW LR
Sbjct: 245 INSIGVSKESQTRATTILN----------ELTKTCRTQSESFFEYGYEKMKSRWERLREV 294
Query: 126 AAASGIFSLPEETSGFCNFTKETAATNPAFAWLRCDREDVEDCAGFLRGHKILTRSGAQF 185
+ F+LP FCNF +T +T+PAFAWL E D L+ K+LTR G +
Sbjct: 295 VESGDAFTLPNYPQDFCNFFGKTLSTSPAFAWLGYKEE--RDLGSLLKEKKVLTRGGDRC 352
Query: 186 GADARYVRVSMLDRDDAFDIFINRLSSLK 214
G + RYVRVSML RDD FD+ + RL+++K
Sbjct: 353 GCNKRYVRVSMLSRDDDFDVSLQRLATIK 381
>AT1G34040.1 | chr1:12374433-12376179 FORWARD LENGTH=458
Length = 457
Score = 167 bits (422), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 78/207 (37%), Positives = 124/207 (59%), Gaps = 15/207 (7%)
Query: 5 NGRTVHDLAYYWPQYTPITKRASHDIMLFTVSKSTGHAGTRIGWALVKDRAIARKMTKFV 64
N + +HD AYYWP ++PIT++A D+ LF++SK+TGHAG+R GWALVK++ + KM ++
Sbjct: 251 NVKYIHDYAYYWPYFSPITRQADEDLSLFSLSKTTGHAGSRFGWALVKEKTVYEKMKIYI 310
Query: 65 ELNTIGVSKDSQMRAAKVL-AAVSDGYERRPEQTKETMTTPLRLFDFGRRKMVERWSMLR 123
L+++GVS+D+Q+RA ++L + DG +F FG + +RW +L
Sbjct: 311 SLSSMGVSRDTQLRALQLLKVVIGDGGN--------------EIFRFGYGTLKKRWEILN 356
Query: 124 AAAAASGIFSLPEETSGFCNFTKETAATNPAFAWLRCDREDVEDCAGFLRGHKILTRSGA 183
+ S FSL +CN+ K+ P++AW++C+R + DC + KI R+G
Sbjct: 357 KIFSMSTRFSLETIKPEYCNYFKKVREFTPSYAWVKCERPEDTDCYEIFKAAKITGRNGE 416
Query: 184 QFGADARYVRVSMLDRDDAFDIFINRL 210
FG+D R+VR+S++ D FD I L
Sbjct: 417 MFGSDERFVRLSLIRSQDDFDQLIAML 443
>AT1G34060.1 | chr1:12396561-12398299 REVERSE LENGTH=464
Length = 463
Score = 164 bits (416), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 80/210 (38%), Positives = 120/210 (57%), Gaps = 15/210 (7%)
Query: 5 NGRTVHDLAYYWPQYTPITKRASHDIMLFTVSKSTGHAGTRIGWALVKDRAIARKMTKFV 64
N +T+HD AYYWP ++PIT D+ LF++SK+TGHAG+R GW LVKD+AI KM +F+
Sbjct: 253 NVKTLHDYAYYWPHFSPITHPVDEDLSLFSLSKTTGHAGSRFGWGLVKDKAIYEKMDRFI 312
Query: 65 ELNTIGVSKDSQMRAAKVL-AAVSDGYERRPEQTKETMTTPLRLFDFGRRKMVERWSMLR 123
L ++GVSK++Q+ ++L V DG +F FG + +RW L
Sbjct: 313 RLTSMGVSKETQLHVLQLLKVVVGDGGN--------------EIFSFGYGTVKKRWETLN 358
Query: 124 AAAAASGIFSLPEETSGFCNFTKETAATNPAFAWLRCDREDVEDCAGFLRGHKILTRSGA 183
+ S FSL +CN+ K+ P++AW++C+R + +C R KI R+G
Sbjct: 359 KIFSMSTRFSLQTIKPEYCNYFKKVREFTPSYAWVKCERPEDTNCYEIFRAAKITGRNGN 418
Query: 184 QFGADARYVRVSMLDRDDAFDIFINRLSSL 213
FG++ R+VR+S++ D FD I L L
Sbjct: 419 VFGSEERFVRLSLIRSQDDFDQLIAMLKKL 448
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.322 0.133 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,325,735
Number of extensions: 159102
Number of successful extensions: 324
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 316
Number of HSP's successfully gapped: 5
Length of query: 214
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 120
Effective length of database: 8,529,465
Effective search space: 1023535800
Effective search space used: 1023535800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 109 (46.6 bits)