BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0165100 Os01g0165100|AK103011
(502 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G40390.1 | chr2:16867385-16868961 FORWARD LENGTH=497 501 e-142
AT5G64190.1 | chr5:25679432-25681153 FORWARD LENGTH=503 488 e-138
AT2G15020.1 | chr2:6491706-6493286 REVERSE LENGTH=527 159 3e-39
>AT2G40390.1 | chr2:16867385-16868961 FORWARD LENGTH=497
Length = 496
Score = 501 bits (1290), Expect = e-142, Method: Compositional matrix adjust.
Identities = 242/494 (48%), Positives = 324/494 (65%), Gaps = 9/494 (1%)
Query: 8 DVWGWITNLPPFSQWRSNAMSLCICPTPSASESSQPSVNLSVVKTPPTQPSFVTFSIFAN 67
D + W+ LPP S W+ N MS+CIC + SS PS+N ++ +TP + P+F TFSI AN
Sbjct: 8 DAFAWLQTLPPLSLWKGNLMSMCIC----SPNSSHPSLNFTLTRTPQS-PNFFTFSIVAN 62
Query: 68 YRVPISLWTSKPVHLKSYTQQS-LDEQEMLELFVDIVDWVLRSGPNKK-LSFQFPRAQIH 125
++ PI+L+ SK S + L+E + L + VD VL + S Q
Sbjct: 63 FKTPITLFISKTFRTISTNSTTFLNENVISTLLMGFVDVVLNYNVKRTTCSIQLQNLGST 122
Query: 126 GNLKDVFNIVFLSLAFLVCIYEAPHALRCRCLESLRTQLTGPKCKDAAKTFVRMLGANLE 185
NLKDVFN+ F + FL+CIYEAP +LR CL++++ QL + + +K + LG+NLE
Sbjct: 123 SNLKDVFNLAFFTFVFLICIYEAPTSLRTTCLKTVKDQLVTCRSRQGSKLLMVQLGSNLE 182
Query: 186 EQWMQTMNLAVTNWIVEQRSSHHSFGVPSPLFSYALSASGLWKVQLYCPLIAMSMEDPAV 245
EQWM+++NLA+TNWI+E ++ H PSPLFSYA S GLWKV +YCP++AM ME
Sbjct: 183 EQWMRSLNLAITNWIIEIKAFQH-LKSPSPLFSYAFSTQGLWKVHMYCPVVAMEMESVNS 241
Query: 246 PTQDERLLFSLTYQQLEGVIQLAYKTIRRDNWIDVEIKVDNIRCDVDSLVSEILMTERGH 305
DERL FSL Y QLEGVIQL ++ R+ W +V + +DN+RCD+ LV+E L++ERG
Sbjct: 242 SLNDERLFFSLNYHQLEGVIQLNHRIYVREKWFNVAVNIDNVRCDIIRLVNEKLLSERGM 301
Query: 306 GSEEKHFPSRVMLQITPMQQXXXXXXXXXXXXXNPTHEFGLEKGIEGSFDPPNTF-GLKA 364
G+EEKHFPSR+ LQ+TP Q NP EF +EKGIE + DPPNTF GLK
Sbjct: 302 GTEEKHFPSRISLQLTPTNQSNILMVSVQKSSENPLTEFEVEKGIEATIDPPNTFFGLKV 361
Query: 365 SVSESLTLTMKPWKFEQSVHGNTTTLNWFLHDGVNGREVYXXXXXXXXXXQPRAWFRDRY 424
S +E+ T +MKPWKFE+ VHG + L WFLHD +GREV PRAWF++RY
Sbjct: 362 SANETTTKSMKPWKFEEWVHGYSANLTWFLHDLDDGREVSSSKPSKVSMMNPRAWFKNRY 421
Query: 425 STVYRPFTKKGGVIFARDEYGDSVWWKICGAALGKTMDWEIRGWIWLTYWPNKQKTFHSE 484
S+ +RPFTK+GGV+FA D YG SV WK+ A+GK M++E++G +WLTYWPNK TF+S+
Sbjct: 422 SSAFRPFTKQGGVVFAGDSYGQSVLWKVDKTAIGKVMEFEVKGCVWLTYWPNKHHTFYSD 481
Query: 485 TRRLEFRECLQLPL 498
TR+LEF+E L L L
Sbjct: 482 TRKLEFKEMLYLNL 495
>AT5G64190.1 | chr5:25679432-25681153 FORWARD LENGTH=503
Length = 502
Score = 488 bits (1256), Expect = e-138, Method: Compositional matrix adjust.
Identities = 248/506 (49%), Positives = 329/506 (65%), Gaps = 13/506 (2%)
Query: 1 MAHSLPLDVWGWITNLPPFSQWRSNAMSLCICPTPSASESSQPSVNLSVVKTPPTQPSFV 60
M+ P DV+ WI N+P ++WR+ ++ CICP S S+ ++NL+ K+P P V
Sbjct: 1 MSEKFP-DVFTWIQNIPQITKWRTTSLPFCICP--STSDFPNSTLNLTAQKSP--SPKVV 55
Query: 61 TFSIF--ANYRVPISLWTSK-PVHLKSYTQQSLDEQEMLELFVDIVDWVLR--SGPNKKL 115
TFSI +N P+ LWT+K + + + DE ++ L + V+ +L S +
Sbjct: 56 TFSIIVQSNNHSPLYLWTTKQELSINPNSPNPFDELTIISLLFNFVETILTYTSNSSNYS 115
Query: 116 SFQFPRAQIH--GNLKDVFNIVFLSLAFLVCIYEAPHALRCRCLESLRTQLTGPKCKDAA 173
+ + P + G LKD+ N V L+L+F+VC+YEAP LR CL +L+ L + A
Sbjct: 116 TIKIPNSDSSKIGGLKDIVNTVILTLSFVVCVYEAPLYLRENCLNTLKNHLITCHTRRAT 175
Query: 174 KTFVRMLGANLEEQWMQTMNLAVTNWIVEQRSSHHSFGVPSPLFSYALSASGLWKVQLYC 233
+ +++LG+NLEEQWM+T+NLA TNWI+EQR S + +PLFSYA+SA GLWKVQLYC
Sbjct: 176 ISLMKLLGSNLEEQWMRTVNLAFTNWIIEQRRSQSTKITTTPLFSYAVSAYGLWKVQLYC 235
Query: 234 PLIAMSMEDPAVPTQDERLLFSLTYQQLEGVIQLAYKTIRRDNWIDVEIKVDNIRCDVDS 293
P+ AM +E + PT D RLLFSL + QLEGV+Q +K + RDNWIDV +K+DNIR DV
Sbjct: 236 PVEAMEVERSSNPTADSRLLFSLKFNQLEGVMQFNHKVVVRDNWIDVIVKIDNIRYDVIK 295
Query: 294 LVSEILMTERGHGSEEKHFPSRVMLQITPMQQXXXXXXXXXXXXXNPTHEFGLEKGIEGS 353
LV+E LM+ RG G EKHFPSR+ LQ+TP Q NP EF +E+ IEGS
Sbjct: 296 LVNEKLMSRRGAGEHEKHFPSRISLQLTPTLQTDFISVSVSKSSNNPGREFEVERSIEGS 355
Query: 354 FDPPNTFGLKASVSESLTLTMKPWKFEQSVHGNTTTLNWFLHD-GVNGREVYXXXXXXXX 412
FDPPN+ GL+ + E+ T+TM PWK EQSV G T LNW L+D V GREV+
Sbjct: 356 FDPPNSLGLRVAGREASTMTMTPWKLEQSVLGYTANLNWILYDSSVGGREVFSTKPSRFS 415
Query: 413 XXQPRAWFRDRYSTVYRPFTKKGGVIFARDEYGDSVWWKICGAALGKTMDWEIRGWIWLT 472
PR+WF+DRY+ YR FT++GGVIFA DEYG+SV WKI ALG TM+WEI+G+IWLT
Sbjct: 416 IMSPRSWFKDRYARAYRSFTRRGGVIFAGDEYGESVVWKIGKGALGGTMEWEIKGFIWLT 475
Query: 473 YWPNKQKTFHSETRRLEFRECLQLPL 498
YWPNK KTF+ ETRRLEF + L L +
Sbjct: 476 YWPNKYKTFYHETRRLEFTQLLNLTI 501
>AT2G15020.1 | chr2:6491706-6493286 REVERSE LENGTH=527
Length = 526
Score = 159 bits (403), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 148/560 (26%), Positives = 242/560 (43%), Gaps = 104/560 (18%)
Query: 7 LDVWGWITNL---PPFSQWRSNAMSLCICPTPSASESSQPSVNLSVVKT--PPTQPSFVT 61
+D W WI L P FS+ S+A+ + S+ L +T + +T
Sbjct: 1 MDPWSWICELPEDPEFSESDSHAVF-------QLAGDLTRSIKLRAERTLGSDQESHSLT 53
Query: 62 FSIFA---NYRVPISLWTSKPVHLKSYTQQSLDEQEMLELFVDIVDWVLRSGP--NKKLS 116
F++ A N ++W S L S E+ L L + ++ ++ P +
Sbjct: 54 FTVVAEGFNLLKSSTIWVSNTCPLSS-------EKPFLPLVLQLLQELITRSPTTHDGAC 106
Query: 117 FQFPRAQIH-------------GNLKDVFNIVFLSLAFLVCIYEAP-------------- 149
+F + +I + VFN++ L+ F +C+++AP
Sbjct: 107 TKFEQLEIKPSPVSWVMDSHSPESFSSVFNLILLTRLFWLCVFDAPSEVGSFFFQHLLGP 166
Query: 150 --HALRCRCLESLRTQLTGPKCKDAAKTFVRMLGANLEEQWMQTMNLAVTNWIVEQRSS- 206
+AL C+ LRT L DA VR L +WM + + + N ++Q SS
Sbjct: 167 HVNALTCQHAPVLRTFLVSLGV-DAELCIVRAASYAL-SKWMISKEIGLGNLGLKQFSSS 224
Query: 207 ---HHSFGVPSPLFSYALSASGLWKVQLYCPLIAMSMED-------------PAVPTQDE 250
HS G FSYA A GLW ++ Y P+++M++ + P V ++
Sbjct: 225 LMPRHSLG-----FSYATEAHGLWILKGYFPILSMNVTNNSSNEVHNKIVKFPFVEPKEA 279
Query: 251 RLLFSLTYQQLEGVIQLAYKTIRRDNWIDVEIKVDNIRCDVDSLVSEILMTERGHG---- 306
L ++L++QQ E ++Q Y +N+I V +VDNIR VS++ + G G
Sbjct: 280 VLRYALSHQQAEILVQFEYSVKFYENYIKVNARVDNIRIH----VSKLGFHKGGVGVENQ 335
Query: 307 -----SEEKHFPSRVMLQITP-MQQXXXXXXXXXXXXXNPTHEFGLEKGIEGSFDPPNTF 360
SEE++FPSRV + + P + N + + + ++G+F
Sbjct: 336 IADCYSEERYFPSRVRVWLGPELGSSHVSGLSLGRSTKNEERDIEVTRVLKGNFGKGKVA 395
Query: 361 -GLKASVSESLTLTMKPWKFEQSVHGNTTTLNWFLHDGVNGREVYXXXXXXXXXXQPRAW 419
+KA + +K W+ EQ GN + L+D +G+EV +P+
Sbjct: 396 PRVKARARMATKRKVKDWRIEQESEGNAAVFDAVLYDRESGQEV--------TTVKPKP- 446
Query: 420 FRDRYSTVYRPFTKKGGVIFARDEYGDSVWWKICGAALGKTMDWEIRGWIWLTYWPNKQK 479
+ FTK GG++F RDEYGD V W++ G + W + G IWLTYWPNK
Sbjct: 447 ---NQEGLKNVFTKSGGMVFGRDEYGDEVGWRVGREMEGSVLKWRLGGKIWLTYWPNKLN 503
Query: 480 TFHSETRRLEFRECLQLPLM 499
T ETR +E+ + + LPL+
Sbjct: 504 TLFYETRCVEWCDEVDLPLL 523
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.135 0.434
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 11,191,575
Number of extensions: 455549
Number of successful extensions: 999
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 986
Number of HSP's successfully gapped: 3
Length of query: 502
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 399
Effective length of database: 8,282,721
Effective search space: 3304805679
Effective search space used: 3304805679
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 114 (48.5 bits)