BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0151600 Os01g0151600|AK063435
         (358 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G59960.1  | chr5:24142352-24145140 REVERSE LENGTH=360          481   e-136

>AT5G59960.1 | chr5:24142352-24145140 REVERSE LENGTH=360
          Length = 359

 Score =  481 bits (1238), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 232/342 (67%), Positives = 279/342 (81%)

Query: 8   HLEALSLEIERKLQKALNSNSXXXXXXXXXFADIALKVDDRARDVILSTNDDGIAPVDER 67
           +LEAL+ EI++KL +A+ S +         FADIAL+VDDRA+DVILS  +D I   +  
Sbjct: 17  YLEALTQEIKKKLTRAVVSPAQTRNLLQDLFADIALEVDDRAKDVILSKEEDLITSDEAD 76

Query: 68  EDTRLCFYEILANHFVKVPESGRRILDLIVQLWSQSFAANIFALLFHRWLFEVPLDGKEV 127
            D  LCF+++LA+++VKV E G+ ILDL+VQLWSQSFA++IF+LLFH+WLFEV LD +E+
Sbjct: 77  ADGPLCFFDVLADYYVKVSERGKDILDLMVQLWSQSFASHIFSLLFHKWLFEVELDNQEI 136

Query: 128 SLRYSSALVQGATNVFWIDIQTNTRHFLSLYNYLLEEVALVPDQLSKISVQAGRGLFLLL 187
            LRYSSALVQGATNVFWIDIQTNTR F SL+ YLLEEVAL   +L KI +QA R L+LLL
Sbjct: 137 LLRYSSALVQGATNVFWIDIQTNTRRFQSLFRYLLEEVALEQIRLKKIPIQAQRELYLLL 196

Query: 188 SRFMLFYDQDHLLASFLEHFPTFPNSFLVGGPADYYVIELTDQLQKLKVEPVLLHYLSRL 247
           SRF+ FY+    L SFL +FP FPN+FL+GGP D+ VIELTDQLQKLKVEPVLLHYLS++
Sbjct: 197 SRFIFFYNSVDKLDSFLRNFPEFPNAFLIGGPGDFLVIELTDQLQKLKVEPVLLHYLSQM 256

Query: 248 TILQGLELRMSTSTRLKACLYSFTSPGGPTYPTRAVRHAAWNTLDLLFPVGRYPRHVISL 307
            ILQG+ELRM+TSTRLKACLYSFTSPGGP YPTRAVRHAAW+ LD LFPVGRYPRH+ISL
Sbjct: 257 KILQGMELRMTTSTRLKACLYSFTSPGGPMYPTRAVRHAAWDALDSLFPVGRYPRHLISL 316

Query: 308 FFRLLYPWYWPSSCWNFIMTCVKTVYYYILNLIVSSWENMRR 349
           FFRLLYPWYWPSSCWNF+++C+K V Y I+ LI S  E  R+
Sbjct: 317 FFRLLYPWYWPSSCWNFVVSCIKAVLYSIVRLIFSRREKPRQ 358



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.326    0.140    0.435 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,524,317
Number of extensions: 306636
Number of successful extensions: 789
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 789
Number of HSP's successfully gapped: 1
Length of query: 358
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 258
Effective length of database: 8,364,969
Effective search space: 2158162002
Effective search space used: 2158162002
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 112 (47.8 bits)