BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0151500 Os01g0151500|Os01g0151500
(492 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G29210.1 | chr4:14400990-14403319 FORWARD LENGTH=638 361 e-100
AT4G39650.1 | chr4:18403602-18405914 FORWARD LENGTH=579 312 3e-85
AT4G39640.1 | chr4:18400608-18402861 FORWARD LENGTH=573 301 4e-82
AT1G69820.1 | chr1:26283312-26284134 REVERSE LENGTH=192 113 3e-25
>AT4G29210.1 | chr4:14400990-14403319 FORWARD LENGTH=638
Length = 637
Score = 361 bits (926), Expect = e-100, Method: Compositional matrix adjust.
Identities = 170/300 (56%), Positives = 216/300 (72%), Gaps = 1/300 (0%)
Query: 88 CSEDMYAGNPTSKYKGALAMGIPGELAGLHAAWSRYGRLPWKDLFAPAIKLARDGFTVVP 147
S+DMY + ++K GAL+MG+PGE+AGL+ AW RYGRLPWK LF PAIKLARDGF V P
Sbjct: 154 ASKDMYKNDASAKSLGALSMGVPGEIAGLYEAWKRYGRLPWKPLFEPAIKLARDGFVVYP 213
Query: 148 YLEIALKKTERDVLADPGLRAVLAPEGRILAAGEVCRNPALADTLEAIASGGVEAFYGGA 207
YL A+ +L DPG+R+V + G++L GE C NP LA +LE I+ G AFY G
Sbjct: 214 YLGKAISTKVAMILKDPGMRSVFSRNGQVLKTGETCYNPELAQSLETISEQGPGAFYNGT 273
Query: 208 VGERFVADVRRAGGIAKVDDLRAYKVEVSDAMRSDAMGYTFLGMXXXXXXXXXXALILNI 267
VGE+ V DV++AGGI +DDLR+YKV V+DAM D MGYT GM ++++NI
Sbjct: 274 VGEKLVKDVKKAGGIITMDDLRSYKVRVTDAMSVDVMGYTVHGMPPPSGGTVGFSMVMNI 333
Query: 268 LSGYKSLEFLKGF-LGLHRFIEAFKHMLAIRMDLGDPDYVNITGNVSEMLSPAFADKLRQ 326
L Y +L G LGLHR IEA KHM A RMDLGDP++VN+T ++++MLS A A+++++
Sbjct: 334 LDSYSNLYTASGRELGLHRLIEAMKHMFAARMDLGDPEFVNVTNSMNQMLSKAHAEEIQK 393
Query: 327 RIVDNTTFPPSYYFPKWSQLDDHGTSHLCVVDGDRNAVAMTTTENHLFGAHLLSPSTGIV 386
RI DNTTFPP YY +WSQL D GTSH CVVD DRN+V+MT+T N+ FGA +LSPSTGIV
Sbjct: 394 RIFDNTTFPPEYYMNRWSQLRDQGTSHFCVVDADRNSVSMTSTVNYRFGAGVLSPSTGIV 453
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 48/95 (50%), Gaps = 10/95 (10%)
Query: 408 QLVPNEVVYENVTVVDGEVFELSGEAREFLRRRGHRLTSTDSGAVCQFIVQDLLTPVAA- 466
+L+PN V YEN T ++G+ +S + + FL RGH L GA+ Q IVQ
Sbjct: 543 RLIPNVVSYENFTTINGDHIGVSEDTKMFLAERGHELKELSGGAIVQLIVQSFKEEKEEE 602
Query: 467 ---------AGDENVFHGMLTAVSDPRKDGRPAGM 492
G+LTAVSDPRKDG+PA +
Sbjct: 603 MIIEIGRKIGKKSKPLKGLLTAVSDPRKDGKPAAV 637
>AT4G39650.1 | chr4:18403602-18405914 FORWARD LENGTH=579
Length = 578
Score = 312 bits (799), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 148/300 (49%), Positives = 199/300 (66%), Gaps = 1/300 (0%)
Query: 88 CSEDMYAGNPTSKYKGALAMGIPGELAGLHAAWSRYGRLPWKDLFAPAIKLARDGFTVVP 147
+EDMY NP K KG+L++G+PGE+AGL+ AW+++G+LPWK L PA KLA +GF +
Sbjct: 110 ATEDMYGDNPERKKKGSLSVGVPGEVAGLYTAWTQHGKLPWKQLVEPAEKLAAEGFKISK 169
Query: 148 YLEIALKKTERDVLADPGLRAVLAPEGRILAAGEVCRNPALADTLEAIASGGVEAFYGGA 207
YL + + T D+LAD GL + G + G +CRNP LADTL IA G +AFY G
Sbjct: 170 YLYMQMNATRSDILADKGLSELFVSNGELKKPGAICRNPKLADTLSQIAEYGPKAFYNGT 229
Query: 208 VGERFVADVRRAGGIAKVDDLRAYKVEVSDAMRSDAMGYTFLGMXXXXXXXXXXALILNI 267
VG V+D+++AGGI + DL+ Y V+V + + ++ +GY LGM LILNI
Sbjct: 230 VGFNLVSDIQKAGGIITLKDLQNYNVKVKEPLSTEILGYRLLGMPPPSSGGPAMMLILNI 289
Query: 268 LSGYKSLEFLKGFLGLHRFIEAFKHMLAIRMDLGDPDYV-NITGNVSEMLSPAFADKLRQ 326
L+ Y + G LG+HR +EA KH A+RM+LGDPD+V +T V++MLSP FA L+
Sbjct: 290 LAQYGIPSGVSGPLGVHRLVEALKHAFAVRMNLGDPDFVPEVTNVVADMLSPKFAQDLKS 349
Query: 327 RIVDNTTFPPSYYFPKWSQLDDHGTSHLCVVDGDRNAVAMTTTENHLFGAHLLSPSTGIV 386
+I D TF P YY KW Q+ DHGTSHL ++D +RNAV+MT+T N FGA +LSPSTGIV
Sbjct: 350 KINDEKTFDPKYYGGKWGQIKDHGTSHLSIIDSERNAVSMTSTINGYFGAIMLSPSTGIV 409
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 44/84 (52%), Gaps = 7/84 (8%)
Query: 408 QLVPNEVVYENVTVVDGEVFELSGEAREFLRRRGHRLTSTDSGAVCQFIVQDLLTPVAAA 467
QL+PN+ YEN T V + FE+ E R L ++G LT G + Q IV+ +
Sbjct: 501 QLIPNKASYENWTTVYSDHFEIPEEIRLVLEKKGQVLTPIAGGTISQLIVEQ-------S 553
Query: 468 GDENVFHGMLTAVSDPRKDGRPAG 491
++ L AVSDPRK G P+G
Sbjct: 554 DGKSGGISKLVAVSDPRKGGFPSG 577
>AT4G39640.1 | chr4:18400608-18402861 FORWARD LENGTH=573
Length = 572
Score = 301 bits (772), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 145/300 (48%), Positives = 197/300 (65%), Gaps = 1/300 (0%)
Query: 87 RCSEDMYAGNPTSKYKGALAMGIPGELAGLHAAWSRYGRLPWKDLFAPAIKLARDGFTVV 146
R +E+MY GN K KGAL++G+PGE+AGL AW ++G+LPWK L PA KLA +GF +
Sbjct: 105 RATENMYGGNVDLKKKGALSVGVPGEVAGLFTAWKQHGKLPWKRLVTPAEKLA-EGFKIS 163
Query: 147 PYLEIALKKTERDVLADPGLRAVLAPEGRILAAGEVCRNPALADTLEAIASGGVEAFYGG 206
YL + + T D+LAD GL + G + G +C NP LA TL+ I G +AFY G
Sbjct: 164 KYLYMQMNATRSDILADKGLSDLFVSNGELKKPGTICHNPKLALTLKLIGEYGPKAFYNG 223
Query: 207 AVGERFVADVRRAGGIAKVDDLRAYKVEVSDAMRSDAMGYTFLGMXXXXXXXXXXALILN 266
VG D++++GGI + DL++Y+V++ + + +D +GY LGM L+LN
Sbjct: 224 TVGVNLARDIKKSGGIITLKDLQSYRVKIKEPLSADILGYRVLGMPPPSSGGAAMMLVLN 283
Query: 267 ILSGYKSLEFLKGFLGLHRFIEAFKHMLAIRMDLGDPDYVNITGNVSEMLSPAFADKLRQ 326
ILS Y + G LG+HR IEA KH A+RM+LGDPD+ ++T VS+MLSP FA L+
Sbjct: 284 ILSQYGIPSGVSGPLGVHRLIEALKHAFAVRMNLGDPDFTDVTKVVSDMLSPKFAKDLKS 343
Query: 327 RIVDNTTFPPSYYFPKWSQLDDHGTSHLCVVDGDRNAVAMTTTENHLFGAHLLSPSTGIV 386
+I D TF P YY W+Q+DDHGTSHL ++D +RNAV+MT+T N FGA +LSPSTGIV
Sbjct: 344 KINDQKTFDPKYYGGMWNQIDDHGTSHLSIIDRERNAVSMTSTINGYFGALMLSPSTGIV 403
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 46/84 (54%), Gaps = 7/84 (8%)
Query: 408 QLVPNEVVYENVTVVDGEVFELSGEAREFLRRRGHRLTSTDSGAVCQFIVQDLLTPVAAA 467
QL+PN YEN T V + FE+ R L ++GH L+ G + QFIVQ+ +
Sbjct: 495 QLIPNRASYENWTTVFNDHFEIPKATRVVLEKKGHVLSPIAGGTIAQFIVQE-------S 547
Query: 468 GDENVFHGMLTAVSDPRKDGRPAG 491
G+ + L AVSDPRK G P+G
Sbjct: 548 GENSGGRSELVAVSDPRKGGFPSG 571
>AT1G69820.1 | chr1:26283312-26284134 REVERSE LENGTH=192
Length = 191
Score = 113 bits (282), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 49/89 (55%), Positives = 70/89 (78%)
Query: 298 MDLGDPDYVNITGNVSEMLSPAFADKLRQRIVDNTTFPPSYYFPKWSQLDDHGTSHLCVV 357
M+LGDPD+V+++ +S+MLS FA L+++I DN TF P+YY +W Q++DHGTSHL ++
Sbjct: 1 MNLGDPDFVDVSKVISDMLSTNFAQGLKKKINDNKTFDPNYYGGRWDQINDHGTSHLSII 60
Query: 358 DGDRNAVAMTTTENHLFGAHLLSPSTGIV 386
D +RN V++T+T N FGA +LSPSTGIV
Sbjct: 61 DSERNVVSLTSTINSYFGALMLSPSTGIV 89
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.138 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,673,500
Number of extensions: 378740
Number of successful extensions: 672
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 666
Number of HSP's successfully gapped: 7
Length of query: 492
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 389
Effective length of database: 8,282,721
Effective search space: 3221978469
Effective search space used: 3221978469
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 114 (48.5 bits)