BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0150500 Os01g0150500|Os01g0150500
         (234 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G10480.3  | chr5:3298047-3300048 REVERSE LENGTH=231            254   3e-68
AT5G59770.1  | chr5:24079521-24081195 REVERSE LENGTH=273           69   2e-12

>AT5G10480.3 | chr5:3298047-3300048 REVERSE LENGTH=231
          Length = 230

 Score =  254 bits (649), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 126/241 (52%), Positives = 164/241 (68%), Gaps = 22/241 (9%)

Query: 1   MAADGSMVRRLYLSIYNWVAFIGWAQVLCYMTLALLDKGHEAVYAAIERPLLFTQTAAIL 60
           MA   S+VRR+YL++YNW+ F GWAQVL      L + G+E VY AIE+PL   QTAA+L
Sbjct: 1   MAGFLSVVRRVYLTLYNWIVFAGWAQVLYLAITTLKETGYENVYDAIEKPLQLAQTAAVL 60

Query: 61  EVLVFPSSLPLFIRENWRLRGLVRSPVSSTLPQITGRLFITWGILWSFPETQSYIFVTSL 120
           E+L               L GLVRSPVS+TLPQI  RLF+TWGIL+SFPE +S+  VTSL
Sbjct: 61  EIL-------------HGLVGLVRSPVSATLPQIGSRLFLTWGILYSFPEVRSHFLVTSL 107

Query: 121 LICWCI---------IEVTRYSFYGMKESFGFTPSWLLWLRYSTFIACFPVGVVSEICLA 171
           +I W I         +E+ RYSF+G KE+ GF PSW LWLRYS+F+  +P G+ SE+ L 
Sbjct: 108 VISWSITEFPITTWIVEIIRYSFFGFKEALGFAPSWHLWLRYSSFLLLYPTGITSEVGLI 167

Query: 172 YTVLPFMKASEKYCLRMPNKWNFSFNYFYANVFFMAFYVPVVPYLFHHMIAQRKKALSKA 231
           Y  LP +K SE Y +RMPN  NFSF++FYA +  +A YVP  P+++ +M+ QRK+ALSK+
Sbjct: 168 YLALPHIKTSEMYSVRMPNILNFSFDFFYATILVLAIYVPGSPHMYRYMLGQRKRALSKS 227

Query: 232 K 232
           K
Sbjct: 228 K 228



>AT5G59770.1 | chr5:24079521-24081195 REVERSE LENGTH=273
          Length = 272

 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/130 (35%), Positives = 62/130 (47%), Gaps = 14/130 (10%)

Query: 55  QTAAILEVLVFPSSLPLFIRENWRLRGLVRSPVSSTLPQITGRLFITWGILWSFPETQSY 114
           QTAAILEVL                 G+V S   S L Q +GR      I+    E Q  
Sbjct: 103 QTAAILEVL-------------HGAIGIVPSGFLSPLMQWSGRTHFILAIVGQIKEVQDS 149

Query: 115 IFVTSLLICWCIIEVTRYSFYGMKESFGFTPSWLLWLRYSTFIACFPVGVVSEICLAYTV 174
            +++  L+ WCI E+ RY  Y      G  P WL +LRY+ FI  +P G+V E+ + Y  
Sbjct: 150 PWLSITLVAWCIGEMIRYPHYAF-TCLGRCPYWLTYLRYTGFIVIYPTGLVGELLIMYKA 208

Query: 175 LPFMKASEKY 184
           LP++K    Y
Sbjct: 209 LPYVKERNLY 218



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.331    0.141    0.470 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,118,779
Number of extensions: 206277
Number of successful extensions: 530
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 526
Number of HSP's successfully gapped: 2
Length of query: 234
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 139
Effective length of database: 8,502,049
Effective search space: 1181784811
Effective search space used: 1181784811
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 110 (47.0 bits)