BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0141100 Os01g0141100|AK067644
         (268 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G27600.1  | chr2:11781226-11783730 FORWARD LENGTH=436          231   3e-61
AT1G08270.2  | chr1:2606848-2607337 REVERSE LENGTH=133            147   7e-36
AT2G34560.2  | chr2:14560266-14562695 FORWARD LENGTH=394           54   1e-07
AT2G45500.1  | chr2:18749973-18752636 REVERSE LENGTH=492           52   2e-07
AT1G80350.1  | chr1:30205499-30208050 REVERSE LENGTH=524           49   3e-06

>AT2G27600.1 | chr2:11781226-11783730 FORWARD LENGTH=436
          Length = 435

 Score =  231 bits (589), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 120/160 (75%), Positives = 123/160 (76%), Gaps = 4/160 (2%)

Query: 1   MYSNFKEQAIEYVKQAVQEDNAGNYVKAFPLYMNALEYFKTHLKYEKNPKIKEAITAKFT 60
           MYSNFKEQAIEYVKQAV EDNAGNY KAFPLYMNALEYFKTHLKYEKNPKI+EAIT KFT
Sbjct: 1   MYSNFKEQAIEYVKQAVHEDNAGNYNKAFPLYMNALEYFKTHLKYEKNPKIREAITQKFT 60

Query: 61  EYLRRAEEIRAVLDEXXXXXXXXXXXXXXXTRPXXXX---XXXXXXXXXSEQSKLRAGLN 117
           EYLRRAEEIRAVLDE               TRP                 EQSKLRAGLN
Sbjct: 61  EYLRRAEEIRAVLDE-GGSGPGSNGDAAVATRPKTKPKDGEGGGKDGEDPEQSKLRAGLN 119

Query: 118 SAIITEKPNIKWNDVAGLESAKQALQEAVILPVKFPQFFC 157
           SAI+ EKPNIKW+DVAGLESAKQALQEAVILPVKFPQFF 
Sbjct: 120 SAIVREKPNIKWSDVAGLESAKQALQEAVILPVKFPQFFT 159



>AT1G08270.2 | chr1:2606848-2607337 REVERSE LENGTH=133
          Length = 132

 Score =  147 bits (370), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 79/125 (63%), Positives = 87/125 (69%), Gaps = 5/125 (4%)

Query: 33  MNALEYFKTHLKYEKNPKIKEAITAKFTEYLRRAEEIRAVLDEXXXXXXXXXXXXXXXTR 92
           MNALEYFK +LKYEKNP+I++AIT KF EYLRRAEEIRAVL E               T+
Sbjct: 1   MNALEYFKIYLKYEKNPRIRDAITDKFYEYLRRAEEIRAVLVEVGSGKGSNGDAAVA-TK 59

Query: 93  PXXXXXXXXXXXXXSEQSKLRAGLNSAIITEKPNIKWNDVAGLESAKQALQEAVILPVKF 152
           P              E+SKLRAGLNSAII EKPN+KW  VAGLESAKQAL+EAVILPV F
Sbjct: 60  PKTKPKDGGD----GEESKLRAGLNSAIIREKPNVKWTVVAGLESAKQALKEAVILPVNF 115

Query: 153 PQFFC 157
           PQFF 
Sbjct: 116 PQFFT 120



>AT2G34560.2 | chr2:14560266-14562695 FORWARD LENGTH=394
          Length = 393

 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 34/50 (68%)

Query: 107 SEQSKLRAGLNSAIITEKPNIKWNDVAGLESAKQALQEAVILPVKFPQFF 156
           +E   L   L+  II   PNIKW  + GLE+AK+ L+EAV++P+K+P +F
Sbjct: 89  AETRTLAESLSRDIIRGNPNIKWESIKGLENAKKLLKEAVVMPIKYPTYF 138



>AT2G45500.1 | chr2:18749973-18752636 REVERSE LENGTH=492
          Length = 491

 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 30/46 (65%)

Query: 116 LNSAIITEKPNIKWNDVAGLESAKQALQEAVILPVKFPQFFCMVHQ 161
           +N+ I+   P++KW+DVAGL  AKQAL E VILP K    F  + +
Sbjct: 206 INTTIVDRSPSVKWDDVAGLNGAKQALLEMVILPAKRRDLFTGLRR 251



>AT1G80350.1 | chr1:30205499-30208050 REVERSE LENGTH=524
          Length = 523

 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 33/50 (66%)

Query: 112 LRAGLNSAIITEKPNIKWNDVAGLESAKQALQEAVILPVKFPQFFCMVHQ 161
           L A L   ++   P ++W+DVAGL  AK+ L+EAV+LP+  P++F  + +
Sbjct: 221 LAAMLERDVLDSTPGVRWDDVAGLSEAKRLLEEAVVLPLWMPEYFQGIRR 270



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.133    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,491,040
Number of extensions: 146502
Number of successful extensions: 437
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 435
Number of HSP's successfully gapped: 5
Length of query: 268
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 171
Effective length of database: 8,447,217
Effective search space: 1444474107
Effective search space used: 1444474107
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 111 (47.4 bits)