BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0138800 Os01g0138800|AK106157
(431 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G38200.1 | chr5:15256383-15258474 FORWARD LENGTH=437 544 e-155
AT1G66860.1 | chr1:24942240-24944352 FORWARD LENGTH=434 525 e-149
AT1G15040.1 | chr1:5180038-5181315 REVERSE LENGTH=396 455 e-128
>AT5G38200.1 | chr5:15256383-15258474 FORWARD LENGTH=437
Length = 436
Score = 544 bits (1401), Expect = e-155, Method: Compositional matrix adjust.
Identities = 269/423 (63%), Positives = 316/423 (74%), Gaps = 11/423 (2%)
Query: 6 DLARILPRVLIVSRRTVRKNKFVDFVGEYHLDLIVGYGAVPVIVPRVAGVHTLLDSFEPI 65
DL++ILPRVL+VSRRTVRKNKFVDFVGEYHLDLIV YG VPVIVPRV GVH LL+SF+PI
Sbjct: 12 DLSQILPRVLVVSRRTVRKNKFVDFVGEYHLDLIVRYGCVPVIVPRVTGVHMLLESFKPI 71
Query: 66 HGVLLCEGEDVDPXXXXXXXXXXXXXXXEQLDAVRSLHPSDAAIDHEKDSIELRLARRCL 125
HGVLLCEGED+DP E+L +R H SD AID EKDSIEL LA+ CL
Sbjct: 72 HGVLLCEGEDIDPSLYESEISSLSP---EELQEIRETHASDTAIDKEKDSIELGLAKLCL 128
Query: 126 ERNIPFLGICRGSQVLNVACGGTLYQDVDHELPAAAAAVR---HINYDNYDGHRHPVRVL 182
E+NIP+LGICRGSQ+LNVACGGTLY D++ EL R HI+YDNYDGHRH VR++
Sbjct: 129 EQNIPYLGICRGSQILNVACGGTLYLDLEKELTNKLPEERRTMHIDYDNYDGHRHVVRIV 188
Query: 183 PGTPLHEWFAESLDGEDSRLTVNSYHHQGVRRLAERFVPMAFAPDGLVEGFYDPDAYNPG 242
+PLH WF +SLDGE+ + VNSYHHQGV+RLA+RFVPMAFA DGL+EGFYDPDAYNP
Sbjct: 189 ENSPLHSWFKDSLDGENMEILVNSYHHQGVKRLAQRFVPMAFAADGLMEGFYDPDAYNPE 248
Query: 243 EGKFIMGLQFHPERMRKAGSDEFDYPGCPMAYQAFVRAVVAYQEKLXXXXXXMPASPKLN 302
EGKFIMGLQFHPERMR+ DEFDYPGCP AYQ F +AV+AYQ+KL +P + KL+
Sbjct: 249 EGKFIMGLQFHPERMRQHDLDEFDYPGCPAAYQEFAKAVIAYQKKL-NSSLSVPKTLKLD 307
Query: 303 QEMEKQRKVLVRSFSLAKNLYVSGAEAGTPRPAEQRDLDAGAEFLEQSNTAALSVQQEKR 362
EME +RK+LVRSFSLAK +YV GA P+++ +L+ GAEFLE SNT ALS +QE R
Sbjct: 308 SEMENKRKMLVRSFSLAKYMYVRGAPGKN--PSKESELEVGAEFLE-SNT-ALSAEQEMR 363
Query: 363 LKQMGATVRNASGYINXXXXXXXXXXXXXXXXXXXSIDQLSDLASFYHIMGTICSEVLDR 422
LK+MGATVRN Y+ +I+QLS+L +FYH+MG IC EVLDR
Sbjct: 364 LKEMGATVRNGGSYMKKLKVDEDKQRMARNMMKKMNIEQLSELMAFYHLMGNICGEVLDR 423
Query: 423 KLH 425
KL
Sbjct: 424 KLQ 426
>AT1G66860.1 | chr1:24942240-24944352 FORWARD LENGTH=434
Length = 433
Score = 525 bits (1353), Expect = e-149, Method: Compositional matrix adjust.
Identities = 255/426 (59%), Positives = 316/426 (74%), Gaps = 11/426 (2%)
Query: 6 DLARILPRVLIVSRRTVRKNKFVDFVGEYHLDLIVGYGAVPVIVPRVAGVHTLLDSFEPI 65
DL+++LPRVL+VSRRT+RKNKFVDFVGEYHLDLIV GAVPVIVPRVAGVH LL+SF+PI
Sbjct: 8 DLSQVLPRVLVVSRRTLRKNKFVDFVGEYHLDLIVENGAVPVIVPRVAGVHKLLESFKPI 67
Query: 66 HGVLLCEGEDVDPXXXXXXXXXXXXXXXEQLDAVRSLHPSDAAIDHEKDSIELRLARRCL 125
HGVLLCEGED+DP ++LD +R H SD AID EKDSIE LA+ CL
Sbjct: 68 HGVLLCEGEDIDPSLYESEISSLSP---QELDEIRKTHASDTAIDKEKDSIEFALAKLCL 124
Query: 126 ERNIPFLGICRGSQVLNVACGGTLYQDVDHELPAAAA---AVRHINYDNYDGHRHPVRVL 182
E+NIP+LGICRGSQVLNVACGG+LYQD++ E+ HI+YD+YDG+RH V+++
Sbjct: 125 EQNIPYLGICRGSQVLNVACGGSLYQDLEKEVTIKVPEEHKRNHIDYDDYDGYRHEVKIV 184
Query: 183 PGTPLHEWFAESLDGEDSRLTVNSYHHQGVRRLAERFVPMAFAPDGLVEGFYDPDAYNPG 242
+PLH+WF +SLD E + VNSYHHQGV+RLA+RFVPMAFAPDGL+EGFYDPD YNP
Sbjct: 185 KNSPLHKWFKDSLDEEKMEILVNSYHHQGVKRLAQRFVPMAFAPDGLIEGFYDPDMYNPE 244
Query: 243 EGKFIMGLQFHPERMRKAGSDEFDYPGCPMAYQAFVRAVVAYQEKLXXXXXXMPASPKLN 302
EGKF+MGLQFHPERMRK GSDEFD+PGCP+AYQ F +AV+A Q+K+ +P +LN
Sbjct: 245 EGKFLMGLQFHPERMRKNGSDEFDFPGCPVAYQEFAKAVIACQKKV-NSFLSVPKKLELN 303
Query: 303 QEMEKQRKVLVRSFSLAKNLYVSGAEAGTPRPAEQRDLDAGAEFLEQSNTAALSVQQEKR 362
EME +RK+LVRSFSLA+++Y + + +L+ GAEFLE SNT ALSVQQE R
Sbjct: 304 PEMENKRKILVRSFSLARSMYTRS--HSLKNQSTESELEVGAEFLE-SNT-ALSVQQEMR 359
Query: 363 LKQMGATVRNASGYINXXXXXXXXXXXXXXXXXXXSIDQLSDLASFYHIMGTICSEVLDR 422
LK+MGAT+RN + +I++LS+L +FYH+MG I SEVL+R
Sbjct: 360 LKEMGATMRNGGSFTEKLRLDEKKQRKAMNIMKNMNIERLSELMAFYHLMGKISSEVLER 419
Query: 423 KLHSAA 428
KLH++
Sbjct: 420 KLHASV 425
>AT1G15040.1 | chr1:5180038-5181315 REVERSE LENGTH=396
Length = 395
Score = 455 bits (1171), Expect = e-128, Method: Compositional matrix adjust.
Identities = 231/417 (55%), Positives = 277/417 (66%), Gaps = 48/417 (11%)
Query: 8 ARILPRVLIVSRRTVRKNKFVDFVGEYHLDLIVGYGAVPVIVPRVAGVHTLLDSFEPIHG 67
++ILPRVLIVSRRT+RKNK+VDFVGEYHLDLIV GAVPVIVPRV G+H++L SFEPIHG
Sbjct: 9 SKILPRVLIVSRRTLRKNKYVDFVGEYHLDLIVSSGAVPVIVPRVNGIHSMLQSFEPIHG 68
Query: 68 VLLCEGEDVDPXXXXXXXXXXXXXXXEQLDAVRSLHPSDAAIDHEKDSIELRLARRCLER 127
VLLCEGEDVDP E ++ ++ H D ID EKDSIEL LAR CLER
Sbjct: 69 VLLCEGEDVDPSLYADDELSDLSP--EDMEEIKKAHAEDMTIDREKDSIELTLARLCLER 126
Query: 128 NIPFLGICRGSQVLNVACGGTLYQDVDHELPAAAAAVRHINYDNYDGHRHPVRVLPGTPL 187
NIPFLGICRGSQ+LNVA GGTLYQD+D EL HI+YDNYDGHRH R++ TPL
Sbjct: 127 NIPFLGICRGSQILNVAAGGTLYQDIDKELGTTMTTTNHIDYDNYDGHRHEARIVEETPL 186
Query: 188 HEWFAESLDGEDSRLTVNSYHHQGVRRLAERFVPMAFAPDGLVEGFYDPDAYNPGEGKFI 247
H+ F E+ + VNSYHHQGV+RLA+RFVPMA+APDGL+EGFYDP+ Y+P EG+F+
Sbjct: 187 HKLF------EEMEIMVNSYHHQGVKRLAQRFVPMAYAPDGLIEGFYDPNRYDPKEGQFL 240
Query: 248 MGLQFHPERMRKAGSDEFDYPGCPMAYQAFVRAVVAYQEKLXXXXXXMPASPKLNQEMEK 307
MGLQFHPERMR GSDEFDYPGC + YQ FV+AV+A+Q+K EM++
Sbjct: 241 MGLQFHPERMRLPGSDEFDYPGCALVYQEFVKAVIAFQKKQVNATQV---------EMKR 291
Query: 308 QRKVLVRSFSLAKNLYVSGAEAGTPRPAEQRDLDAGAEFLEQSNTAALSVQQEKRLKQMG 367
+ LV+SFS AEFLE +NT LS QQE RLKQMG
Sbjct: 292 KTTTLVKSFS-------------------------QAEFLE-ANT-VLSKQQENRLKQMG 324
Query: 368 ATVRNASGYINXXXXXXXXXXXXXXXXXXXSIDQLSDLASFYHIMGTICSEVLDRKL 424
ATVRN+ Y+ S ++LSD+ SF+H+M +CS + RKL
Sbjct: 325 ATVRNSCVYMK----RMKMKEEQERAMDKLSAERLSDMLSFHHMMARLCSNAIKRKL 377
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.137 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,618,052
Number of extensions: 348770
Number of successful extensions: 668
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 652
Number of HSP's successfully gapped: 3
Length of query: 431
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 330
Effective length of database: 8,337,553
Effective search space: 2751392490
Effective search space used: 2751392490
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 113 (48.1 bits)