BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0137700 Os01g0137700|AK099988
         (295 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G18390.2  | chr1:6327463-6329935 FORWARD LENGTH=655             80   1e-15

>AT1G18390.2 | chr1:6327463-6329935 FORWARD LENGTH=655
          Length = 654

 Score = 80.1 bits (196), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 71/235 (30%), Positives = 105/235 (44%), Gaps = 17/235 (7%)

Query: 27  TVDAINTTNTTSPF--CEPARCGNL-TIGYPFWLAGKHPPECGYRAFQVTCDHRNASLKN 83
           T+ A  T +    F  CEP  CG    I YPF+L+GK    CGY +F++TCD        
Sbjct: 18  TIIATQTLSLDPKFKACEPKSCGKGPQISYPFYLSGKQESFCGYPSFELTCDDEEKLPVL 77

Query: 84  GF--WTYQIQHIFYHNSSFMVTNEQLTDGQCVIESFVNASSDLGLTPFKISPINRELIFL 141
           G     Y I++I Y   SF V N + +   C      N +  L  TPF ++P +     L
Sbjct: 78  GISGEEYVIKNISYLTQSFQVVNSKASHDPCP-RPLNNLT--LHRTPFFVNPSHINFTIL 134

Query: 142 YNCNQSRLQQLPPSWAPVSCAENESPNSYAWLAGRYKPDDDLRQQPGNC-TVSMIPVLGY 200
           YNC+   L+       P++CA N S      +  R K   + +    +C  +  +PVL  
Sbjct: 135 YNCSDHLLEDF--RTYPLTCARNTSLLRSFGVFDRKKLGKEKQIASMSCQKLVDVPVLAS 192

Query: 201 D--GAAAKDYERLIKGGFLLDYTAGPDDCEDCSRSGRWCRVNVTYDGLDCQCPEG 253
           +        Y  ++K GF+L++TA  + C  C  SG  C  +       C CP+G
Sbjct: 193 NESDVMGMTYVEILKRGFVLNWTA--NSCFRCITSGGRCGTD--QQEFVCLCPDG 243



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.322    0.137    0.459 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,043,947
Number of extensions: 302751
Number of successful extensions: 493
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 494
Number of HSP's successfully gapped: 3
Length of query: 295
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 197
Effective length of database: 8,419,801
Effective search space: 1658700797
Effective search space used: 1658700797
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 111 (47.4 bits)