BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0136700 Os01g0136700|J100087C20
(314 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G18390.2 | chr1:6327463-6329935 FORWARD LENGTH=655 78 5e-15
AT1G67025.1 | chr1:25013344-25014435 REVERSE LENGTH=222 52 5e-07
>AT1G18390.2 | chr1:6327463-6329935 FORWARD LENGTH=655
Length = 654
Score = 78.2 bits (191), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 101/220 (45%), Gaps = 16/220 (7%)
Query: 60 CEPARCGN-LTIGYPFWLAGKHPPECGYRTFQVTCDHRNASLKNGI--WTYQIQRIFYHN 116
CEP CG I YPF+L+GK CGY +F++TCD GI Y I+ I Y
Sbjct: 34 CEPKSCGKGPQISYPFYLSGKQESFCGYPSFELTCDDEEKLPVLGISGEEYVIKNISYLT 93
Query: 117 SSFMVTNEQLTDGQCVIESFVNASSDLGLTQFKISPINRELVFLYNCSQSRRQLPISWAP 176
SF V N + + C N + L T F ++P + LYNCS + P
Sbjct: 94 QSFQVVNSKASHDPCP-RPLNNLT--LHRTPFFVNPSHINFTILYNCSDHLLE-DFRTYP 149
Query: 177 VSCAKNESSNSYAWLAGKYKPDDDFRQLPGNC-TVSMIPVLGYDGA--VAKNYERLIKGG 233
++CA+N S + + K + + +C + +PVL + + + Y ++K G
Sbjct: 150 LTCARNTSLLRSFGVFDRKKLGKEKQIASMSCQKLVDVPVLASNESDVMGMTYVEILKRG 209
Query: 234 FLLDYTAAAGPDDCEDCSRSGGWCRVNVTYDGLECQCPEG 273
F+L++TA + C C SGG C + C CP+G
Sbjct: 210 FVLNWTA----NSCFRCITSGGRCGTD--QQEFVCLCPDG 243
>AT1G67025.1 | chr1:25013344-25014435 REVERSE LENGTH=222
Length = 221
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 87/212 (41%), Gaps = 24/212 (11%)
Query: 70 IGYPFWLAGKHPPECGYRTFQVTC-DHRNASLKNGIWTYQIQRIFYHNSSFMVTNEQLTD 128
+ YPFW K P CG FQ+TC +++N +L + Q+ N + V +E L +
Sbjct: 17 VTYPFWGVNK-PNYCGQTEFQLTCKNNQNLTLVLTNLSLQVISFDLENQTLTVVDESLFE 75
Query: 129 GQCVIESFVNASSDLGLTQFKISPINRELVFLYNCSQSRRQLPISWAPVSCAKNESSNSY 188
G+C S + G QF I+P E + L+ C S+ P+S + E Y
Sbjct: 76 GRCPSMSL----NFTGANQFTIAP-TVEKIDLFICPASQMVSPLSAFTCRKSNGEIVTYY 130
Query: 189 AWLAGKYKPDDDFRQLPGNCT-VSMIPVLG-----YDGAVAKNYERLIKGGFLLDYTAAA 242
A +KP D +C + PVL + + K E L+KG F L +
Sbjct: 131 A-----FKPSDSVT----DCVKMGEYPVLSSLLDEFQRSRLKLKEALVKG-FDLRFNIRD 180
Query: 243 GPDDCEDCSRSGGWCRVNVTYDGLECQCPEGL 274
C CS S G C +C C + L
Sbjct: 181 D-QSCRGCSNSHGVCGSEPVSGSFQCLCYDKL 211
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.325 0.138 0.456
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,425,671
Number of extensions: 317170
Number of successful extensions: 760
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 761
Number of HSP's successfully gapped: 3
Length of query: 314
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 216
Effective length of database: 8,419,801
Effective search space: 1818677016
Effective search space used: 1818677016
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 112 (47.8 bits)