BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0136000 Os01g0136000|013-010-A12
(149 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G59720.1 | chr5:24062632-24063117 FORWARD LENGTH=162 150 3e-37
AT1G53540.1 | chr1:19980510-19980983 FORWARD LENGTH=158 143 3e-35
AT2G29500.1 | chr2:12633279-12633740 REVERSE LENGTH=154 142 5e-35
AT3G46230.1 | chr3:16984263-16984733 REVERSE LENGTH=157 141 1e-34
AT1G07400.1 | chr1:2275148-2275621 FORWARD LENGTH=158 130 2e-31
AT1G59860.1 | chr1:22031474-22031941 FORWARD LENGTH=156 125 1e-29
AT4G10250.1 | chr4:6370537-6371124 FORWARD LENGTH=196 102 9e-23
AT5G37670.1 | chr5:14969035-14969448 FORWARD LENGTH=138 83 7e-17
AT5G12020.1 | chr5:3882409-3882876 REVERSE LENGTH=156 79 1e-15
AT5G12030.1 | chr5:3884214-3884684 REVERSE LENGTH=157 77 5e-15
AT4G27670.1 | chr4:13819048-13819895 REVERSE LENGTH=228 51 2e-07
AT1G54050.1 | chr1:20179558-20180122 REVERSE LENGTH=156 50 3e-07
>AT5G59720.1 | chr5:24062632-24063117 FORWARD LENGTH=162
Length = 161
Score = 150 bits (379), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 75/124 (60%), Positives = 88/124 (70%)
Query: 26 SLVPATSDRDTAAFANARVDWKETPESHVFKADLPGXXXXXXXXXXXXGNVLVISGQRSK 85
+L A++ RD AAF NARVDWKETPE+HVFKADLPG NVL ISG+RSK
Sbjct: 36 ALANASTARDVAAFTNARVDWKETPEAHVFKADLPGLKKEEVKVEVEDKNVLQISGERSK 95
Query: 86 EKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKASMENGVLXXXXXXXXXXXXXXXXI 145
E E+KNDKWHRVER+SG+FMRRFRLPENAK+++VKA+MENGVL I
Sbjct: 96 ENEEKNDKWHRVERASGKFMRRFRLPENAKMEEVKATMENGVLTVVVPKAPEKKPQVKSI 155
Query: 146 EISG 149
+ISG
Sbjct: 156 DISG 159
>AT1G53540.1 | chr1:19980510-19980983 FORWARD LENGTH=158
Length = 157
Score = 143 bits (361), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 69/115 (60%), Positives = 81/115 (70%)
Query: 35 DTAAFANARVDWKETPESHVFKADLPGXXXXXXXXXXXXGNVLVISGQRSKEKEDKNDKW 94
D AAF NA+VDW+ETPE+HVFKADLPG GN+L ISG+RS E E+KNDKW
Sbjct: 43 DVAAFTNAKVDWRETPEAHVFKADLPGLRKEEVKVEVEDGNILQISGERSNENEEKNDKW 102
Query: 95 HRVERSSGQFMRRFRLPENAKVDQVKASMENGVLXXXXXXXXXXXXXXXXIEISG 149
HRVERSSG+F RRFRLPENAK++++KASMENGVL I+ISG
Sbjct: 103 HRVERSSGKFTRRFRLPENAKMEEIKASMENGVLSVTVPKVPEKKPEVKSIDISG 157
>AT2G29500.1 | chr2:12633279-12633740 REVERSE LENGTH=154
Length = 153
Score = 142 bits (359), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 71/126 (56%), Positives = 83/126 (65%)
Query: 24 FRSLVPATSDRDTAAFANARVDWKETPESHVFKADLPGXXXXXXXXXXXXGNVLVISGQR 83
F+ L ++ R+ +A NARVDW+ETPE+HVFKADLPG +VL ISG+R
Sbjct: 28 FKELTSSSLSRENSAIVNARVDWRETPEAHVFKADLPGLKKEEVKVEIEEDSVLKISGER 87
Query: 84 SKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKASMENGVLXXXXXXXXXXXXXXX 143
EKEDKND WHRVERSSGQF RRFRLPEN K+DQVKA+MENGVL
Sbjct: 88 HVEKEDKNDTWHRVERSSGQFTRRFRLPENVKMDQVKAAMENGVLTVTVPKAETKKADVK 147
Query: 144 XIEISG 149
I+ISG
Sbjct: 148 SIQISG 153
>AT3G46230.1 | chr3:16984263-16984733 REVERSE LENGTH=157
Length = 156
Score = 141 bits (356), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 70/126 (55%), Positives = 86/126 (68%), Gaps = 3/126 (2%)
Query: 27 LVPATSD---RDTAAFANARVDWKETPESHVFKADLPGXXXXXXXXXXXXGNVLVISGQR 83
L P ++ +D AAF NA+VDW+ETPE+HVFKAD+PG GN+L ISG+R
Sbjct: 31 LTPGLTNAPAKDVAAFTNAKVDWRETPEAHVFKADVPGLKKEEVKVEVEDGNILQISGER 90
Query: 84 SKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKASMENGVLXXXXXXXXXXXXXXX 143
S E E+K+D WHRVERSSG+FMRRFRLPENAKV++VKASMENGVL
Sbjct: 91 SSENEEKSDTWHRVERSSGKFMRRFRLPENAKVEEVKASMENGVLSVTVPKVQESKPEVK 150
Query: 144 XIEISG 149
++ISG
Sbjct: 151 SVDISG 156
>AT1G07400.1 | chr1:2275148-2275621 FORWARD LENGTH=158
Length = 157
Score = 130 bits (328), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 65/106 (61%), Positives = 77/106 (72%), Gaps = 1/106 (0%)
Query: 24 FRSL-VPATSDRDTAAFANARVDWKETPESHVFKADLPGXXXXXXXXXXXXGNVLVISGQ 82
F+ L P++ +T+A NARVDWKET E+HVFKADLPG +VL ISG+
Sbjct: 29 FKELQFPSSLSGETSAITNARVDWKETAEAHVFKADLPGMKKEEVKVEIEDDSVLKISGE 88
Query: 83 RSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKASMENGVL 128
R EKE+K D WHRVERSSGQF R+F+LPEN K+DQVKASMENGVL
Sbjct: 89 RHVEKEEKQDTWHRVERSSGQFSRKFKLPENVKMDQVKASMENGVL 134
>AT1G59860.1 | chr1:22031474-22031941 FORWARD LENGTH=156
Length = 155
Score = 125 bits (313), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 62/91 (68%), Positives = 68/91 (74%)
Query: 38 AFANARVDWKETPESHVFKADLPGXXXXXXXXXXXXGNVLVISGQRSKEKEDKNDKWHRV 97
A ANARVDWKET E+HVFKADLPG +VL ISG+R EKE+K D WHRV
Sbjct: 42 AIANARVDWKETAEAHVFKADLPGMKKEEVKVEIEDDSVLKISGERHVEKEEKQDTWHRV 101
Query: 98 ERSSGQFMRRFRLPENAKVDQVKASMENGVL 128
ERSSG F R+FRLPEN K+DQVKASMENGVL
Sbjct: 102 ERSSGGFSRKFRLPENVKMDQVKASMENGVL 132
>AT4G10250.1 | chr4:6370537-6371124 FORWARD LENGTH=196
Length = 195
Score = 102 bits (253), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 49/102 (48%), Positives = 66/102 (64%), Gaps = 1/102 (0%)
Query: 28 VPATSDRDTA-AFANARVDWKETPESHVFKADLPGXXXXXXXXXXXXGNVLVISGQRSKE 86
+P +RDT+ A + ARVDWKET E H D+PG VL +SG+R +E
Sbjct: 56 IPLGLERDTSVALSPARVDWKETAEGHEIMLDIPGLKKDEVKIEVEENGVLRVSGERKRE 115
Query: 87 KEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKASMENGVL 128
+E K D+WHRVERS G+F R+F+LP+N ++ VKA +ENGVL
Sbjct: 116 EEKKGDQWHRVERSYGKFWRQFKLPDNVDMESVKAKLENGVL 157
>AT5G37670.1 | chr5:14969035-14969448 FORWARD LENGTH=138
Length = 137
Score = 82.8 bits (203), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 42/94 (44%), Positives = 56/94 (59%), Gaps = 5/94 (5%)
Query: 40 ANARVDWKETPESHVFKADLPGXXXXXXXXXXXXGNVLVISGQRSKEKEDKNDKWHRVER 99
+ A +DW E+ SH+FK ++PG GNVL I G+ KE++ +N WH ER
Sbjct: 20 STALIDWMESNNSHIFKINVPGYNKEDIKVQIEEGNVLSIRGEGIKEEKKENLVWHVAER 79
Query: 100 SS-----GQFMRRFRLPENAKVDQVKASMENGVL 128
+ +F+RR LPEN KVDQVKA +ENGVL
Sbjct: 80 EAFSGGGSEFLRRIELPENVKVDQVKAYVENGVL 113
>AT5G12020.1 | chr5:3882409-3882876 REVERSE LENGTH=156
Length = 155
Score = 78.6 bits (192), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/96 (41%), Positives = 57/96 (59%), Gaps = 1/96 (1%)
Query: 34 RDTAAFANARVDWKETPESHVFKADLPGXXXXXXXXXXXXGNVLVISGQRSKE-KEDKND 92
RD A A D E P ++ F D+PG NVLV+SG+R +E KE++
Sbjct: 37 RDAKAMAATPADVIEHPNAYAFVVDMPGIKGDEIKVQVENDNVLVVSGERQRENKENEGV 96
Query: 93 KWHRVERSSGQFMRRFRLPENAKVDQVKASMENGVL 128
K+ R+ER G+FMR+F+LPENA +D++ A +GVL
Sbjct: 97 KYVRMERRMGKFMRKFQLPENADLDKISAVCHDGVL 132
>AT5G12030.1 | chr5:3884214-3884684 REVERSE LENGTH=157
Length = 156
Score = 76.6 bits (187), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 60/96 (62%), Gaps = 1/96 (1%)
Query: 34 RDTAAFANARVDWKETPESHVFKADLPGXXXXXXXXXXXXGNVLVISGQRSKE-KEDKND 92
RD A A D E P+++VF D+PG NVLV+SG+R ++ KE++
Sbjct: 38 RDAKAMAATPADVIEHPDAYVFAVDMPGIKGDEIQVQIENENVLVVSGKRQRDNKENEGV 97
Query: 93 KWHRVERSSGQFMRRFRLPENAKVDQVKASMENGVL 128
K+ R+ER G+FMR+F+LP+NA ++++ A+ +GVL
Sbjct: 98 KFVRMERRMGKFMRKFQLPDNADLEKISAACNDGVL 133
>AT4G27670.1 | chr4:13819048-13819895 REVERSE LENGTH=228
Length = 227
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 54/109 (49%), Gaps = 8/109 (7%)
Query: 23 VFRSLVPATS-DRDTAAFANARVDWKETPESHVFKA--DLPGXXXXXXXXXXXXGNVLVI 79
+F +P + +R + + R W E H K D+PG NVLVI
Sbjct: 105 MFEDTMPVSGRNRGGSGVSEIRAPWDIKEEEHEIKMRFDMPGLSKEDVKISVE-DNVLVI 163
Query: 80 SGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKASMENGVL 128
G+ ++KED +D W RS + R +LP+N + D++KA ++NGVL
Sbjct: 164 KGE--QKKEDSDDSWS--GRSVSSYGTRLQLPDNCEKDKIKAELKNGVL 208
>AT1G54050.1 | chr1:20179558-20180122 REVERSE LENGTH=156
Length = 155
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 50/93 (53%), Gaps = 5/93 (5%)
Query: 41 NARVDWKETPESHVFKADLPGXXXXXXXXXXXXGNVLVI--SGQRSKEKEDKND--KWHR 96
N +D E+P+ ++F D+PG LVI +G+R ++ ++ + K+ R
Sbjct: 41 NIPIDILESPKEYIFYLDIPGISKSDIQVTVEEERTLVIKSNGKRKRDDDESEEGSKYIR 100
Query: 97 VERSSGQ-FMRRFRLPENAKVDQVKASMENGVL 128
+ER Q +++FRLPE+A + V A + GVL
Sbjct: 101 LERRLAQNLVKKFRLPEDADMASVTAKYQEGVL 133
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.315 0.130 0.371
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,145,197
Number of extensions: 66939
Number of successful extensions: 195
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 197
Number of HSP's successfully gapped: 12
Length of query: 149
Length of database: 11,106,569
Length adjustment: 89
Effective length of query: 60
Effective length of database: 8,666,545
Effective search space: 519992700
Effective search space used: 519992700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 107 (45.8 bits)