BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0135900 Os01g0135900|AK064849
(75 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G46230.1 | chr3:16984263-16984733 REVERSE LENGTH=157 48 9e-07
AT5G59720.1 | chr5:24062632-24063117 FORWARD LENGTH=162 48 1e-06
AT1G07400.1 | chr1:2275148-2275621 FORWARD LENGTH=158 47 2e-06
AT1G53540.1 | chr1:19980510-19980983 FORWARD LENGTH=158 46 4e-06
>AT3G46230.1 | chr3:16984263-16984733 REVERSE LENGTH=157
Length = 156
Score = 48.1 bits (113), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 6 LFDTLAFDAWNPFSIFGTTVAADAWLASDTSAFANTYIESRETAEAYVFRADLPA 60
+FD + D W+PF F T +A A D +AF N ++ RET EA+VF+AD+P
Sbjct: 15 VFDPFSLDVWDPFEGFLTPGLTNA-PAKDVAAFTNAKVDWRETPEAHVFKADVPG 68
>AT5G59720.1 | chr5:24062632-24063117 FORWARD LENGTH=162
Length = 161
Score = 47.8 bits (112), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 6 LFDTLAFDAWNPFSIFGT--TVAADAWLASDTSAFANTYIESRETAEAYVFRADLPA 60
+FD + D W+PF F T + A+A A D +AF N ++ +ET EA+VF+ADLP
Sbjct: 15 VFDPFSQDLWDPFEGFFTPSSALANASTARDVAAFTNARVDWKETPEAHVFKADLPG 71
>AT1G07400.1 | chr1:2275148-2275621 FORWARD LENGTH=158
Length = 157
Score = 46.6 bits (109), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 4/55 (7%)
Query: 6 LFDTLAFDAWNPFSIFGTTVAADAWLASDTSAFANTYIESRETAEAYVFRADLPA 60
+FD + D W+PF + + L+ +TSA N ++ +ETAEA+VF+ADLP
Sbjct: 17 IFDPFSLDVWDPFK----ELQFPSSLSGETSAITNARVDWKETAEAHVFKADLPG 67
>AT1G53540.1 | chr1:19980510-19980983 FORWARD LENGTH=158
Length = 157
Score = 46.2 bits (108), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 32/55 (58%)
Query: 6 LFDTLAFDAWNPFSIFGTTVAADAWLASDTSAFANTYIESRETAEAYVFRADLPA 60
+FD + D ++PF F T A D +AF N ++ RET EA+VF+ADLP
Sbjct: 15 VFDPFSLDVFDPFEGFLTPSGLANAPAMDVAAFTNAKVDWRETPEAHVFKADLPG 69
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.131 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,138,199
Number of extensions: 28296
Number of successful extensions: 82
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 78
Number of HSP's successfully gapped: 5
Length of query: 75
Length of database: 11,106,569
Length adjustment: 47
Effective length of query: 28
Effective length of database: 9,818,017
Effective search space: 274904476
Effective search space used: 274904476
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 104 (44.7 bits)