BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0127900 Os01g0127900|AK070177
         (428 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G02570.1  | chr3:543463-545478 REVERSE LENGTH=433              473   e-133
AT1G67070.1  | chr1:25042324-25044412 FORWARD LENGTH=442          466   e-132

>AT3G02570.1 | chr3:543463-545478 REVERSE LENGTH=433
          Length = 432

 Score =  473 bits (1216), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 235/411 (57%), Positives = 296/411 (72%), Gaps = 11/411 (2%)

Query: 22  CAVQHYEWGRRGEASLVARLSDANADDHGPDPARPYAELWMGTHPSAPSSLL-ADG---- 76
           C+V+ Y+WG+ G  SLV R+  AN+D +  DP RPYAELWMGTH S PS L  ADG    
Sbjct: 25  CSVKDYDWGKIGSDSLVYRVYAANSD-YEIDPTRPYAELWMGTHESGPSYLEDADGSNGV 83

Query: 77  LLRDWLARHPAALGPAVAARWGGDLPFLFKVLSVAKALSIQAHPDKDLAEVLHALRPATY 136
            LR W+  +P +LG  V  +WG DLPFLFKVLSVA+ LSIQAHPDK LA+ +H   P  Y
Sbjct: 84  TLRSWITENPKSLGNRVLEKWGCDLPFLFKVLSVARPLSIQAHPDKKLAKKMHKAHPNLY 143

Query: 137 KDGNHKPEMAIAVTEFRVLCGFAGIQELKDVLRTVPEVEDLVGPEDAAKLLSVKEYHGVN 196
           KD NHKPEMA+A T+F  LCGF  +QELK V+R +PE+E+LVG E+A ++  + E H   
Sbjct: 144 KDDNHKPEMALAYTQFEALCGFIPLQELKSVIRAIPEIEELVGSEEANQVFCITE-HDEE 202

Query: 197 EVKSCLRSAFTKLMTASKEAVSEAITKLIFRLNAESKVRTLTEKENLVLSLEKQYPEDVG 256
           +VKS +R+ FT LM+A  +   + ++KL  RL+ ES+ R LT+KE LVL LEKQYP D+G
Sbjct: 203 KVKSVVRTIFTLLMSADADTTKKIVSKLKRRLHMESQERQLTDKERLVLKLEKQYPNDIG 262

Query: 257 VLSAFFFNYIKLSPGEALYIGANEPHAYLSGECIECMATSDNVVRAGLTPKYRDVQTLCS 316
           V+SAFFFNY+KL+PGEALY+GANEPHAYL GEC+E MATSDNVVRAGLT K  D+QTLCS
Sbjct: 263 VISAFFFNYVKLNPGEALYLGANEPHAYLFGECLEVMATSDNVVRAGLTSKPLDIQTLCS 322

Query: 317 MLTYKQVFPEILRGVPVQPYVRRYTPPFDEFEVDCCSLPPGELVVISPVSGPSVYLVMAG 376
           ML+YK  +PEIL+G  ++PY+ RY PPF+EFEVD C LP G   V   V GPS+ LV+ G
Sbjct: 323 MLSYKLGYPEILKGTRIRPYITRYLPPFEEFEVDLCDLPSGASTVFPSVPGPSLLLVLQG 382

Query: 377 EGEIQVDSMPNGEKSKQGDVFFVPAYTEVKFSASGPECMQLYRAGVNSRFF 427
           EG +  ++  +G     GDV FVPA TE+   +S    ++LYRAG+NSRF 
Sbjct: 383 EGRMSTEASADG--ISMGDVLFVPADTEIHLRSSSD--LKLYRAGINSRFL 429



>AT1G67070.1 | chr1:25042324-25044412 FORWARD LENGTH=442
          Length = 441

 Score =  466 bits (1200), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 234/420 (55%), Positives = 297/420 (70%), Gaps = 14/420 (3%)

Query: 19  RLRCAVQHYEWGRRGEASLVARLSDANADDHGPDPARPYAELWMGTHPSAPSSL------ 72
           RLRC V++YEWG+ G  SLVARL +AN      D   PYAE WMGTH S PS +      
Sbjct: 24  RLRCFVKNYEWGKLGPESLVARLQEANTGQR-VDSEIPYAEFWMGTHESGPSHVEFGSGH 82

Query: 73  -LADG---LLRDWLARHPAALGPAVAARWGGDLPFLFKVLSVAKALSIQAHPDKDLAEVL 128
            ++D     L+ W+  +P  LG  V  +WG DLPFLFKVLSV KALSIQAHP+K LAE L
Sbjct: 83  GVSDKCMVTLKSWVLDNPNLLGSKVVDKWGCDLPFLFKVLSVTKALSIQAHPNKALAEKL 142

Query: 129 HALRPATYKDGNHKPEMAIAVTEFRVLCGFAGIQELKDVLRTVPEVEDLVGPEDAAKLLS 188
           H   P  Y+D NHKPE+A+AVT F+ LCGF  ++ELK+V+  VPE+ +LVG + A ++ +
Sbjct: 143 HREDPLLYRDNNHKPEIALAVTPFQALCGFVTLKELKEVITNVPEITELVGSKAADQIFN 202

Query: 189 VKEYHGVNEVKSCLRSAFTKLMTASKEAVSEAITKLIFRLNAESKVRTLTEKENLVLSLE 248
           V E+     +KS +R  FT+LM+AS     + ++++  RL  E+K R L+EKE LVL LE
Sbjct: 203 VHEHDEDERIKSVVRLIFTQLMSASNNETKQVVSRMKNRLLLETKHRELSEKEKLVLELE 262

Query: 249 KQYPEDVGVLSAFFFNYIKLSPGEALYIGANEPHAYLSGECIECMATSDNVVRAGLTPKY 308
           KQY  D+GV+SAFFFNY+KL+PGEALY+ ANEPHAY+SG+C+ECMA SDNVVRAGLTPK+
Sbjct: 263 KQYTGDIGVISAFFFNYVKLNPGEALYLDANEPHAYISGDCVECMAASDNVVRAGLTPKH 322

Query: 309 RDVQTLCSMLTYKQVFPEILRGVPVQPYVRRYTPPFDEFEVDCCSLPPGELVVISPVSGP 368
           RDVQTLCSMLTYK  +PEIL+G P+ PYV RY PPFDEFEVD C LP G+  V   V GP
Sbjct: 323 RDVQTLCSMLTYKLGYPEILKGFPLTPYVTRYLPPFDEFEVDHCDLPRGKSTVFPAVPGP 382

Query: 369 SVYLVMAGEGEIQVDSMPNGEKSKQGDVFFVPAYTEVKFSASGPECMQLYRAGVNSRFFN 428
           SVYLV+ G+G+++  S  +     +GDV FVPA  E+  +    + M+LYRAGV+SRFF 
Sbjct: 383 SVYLVIEGKGQLRTGS--SKVLVNRGDVLFVPADIEIHVTGES-DVMKLYRAGVSSRFFQ 439



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.135    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,246,586
Number of extensions: 393888
Number of successful extensions: 891
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 882
Number of HSP's successfully gapped: 2
Length of query: 428
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 327
Effective length of database: 8,337,553
Effective search space: 2726379831
Effective search space used: 2726379831
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 113 (48.1 bits)