BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0120900 Os01g0120900|AK110709
         (201 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G18290.1  | chr1:6297436-6297966 FORWARD LENGTH=177             79   2e-15
AT5G66580.1  | chr5:26572724-26573194 FORWARD LENGTH=157           53   8e-08
AT1G28190.1  | chr1:9847015-9847815 REVERSE LENGTH=267             50   9e-07
AT4G37240.1  | chr4:17524546-17525052 FORWARD LENGTH=169           49   2e-06
AT5G12340.1  | chr5:3992948-3993610 REVERSE LENGTH=221             48   3e-06

>AT1G18290.1 | chr1:6297436-6297966 FORWARD LENGTH=177
          Length = 176

 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 43/98 (43%), Positives = 60/98 (61%), Gaps = 3/98 (3%)

Query: 1  MGITPSCIPLAPVAGGSSSTACKIIH-VDGTVTRLARPVRASELMVDYPGQFVCDSGRLA 59
          MG T SC PL  ++  SSS   KI+    GT+   ++P++ S+++  + G F+ DS  L 
Sbjct: 1  MGNTSSCAPLI-ISTNSSSGVVKILAPFTGTLEVFSKPIKTSDIVSRHSGHFITDSTLLQ 59

Query: 60 VGCRVPGVAADELLEPRR-AYFLLPMDMLYSVLTDEEM 96
          +  RV  V+ DE L PRR  Y LLP DML+SVLT EE+
Sbjct: 60 ISHRVTAVSPDEYLRPRRHLYLLLPTDMLFSVLTQEEL 97



>AT5G66580.1 | chr5:26572724-26573194 FORWARD LENGTH=157
          Length = 156

 Score = 53.1 bits (126), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 42/78 (53%)

Query: 19 STACKIIHVDGTVTRLARPVRASELMVDYPGQFVCDSGRLAVGCRVPGVAADELLEPRRA 78
          S + K+I +DGT+   + PV+  +++   P  FVC+S  +     V  VA +E L   + 
Sbjct: 12 SDSAKLILLDGTLQEFSSPVKVWQILQKNPTSFVCNSDEMDFDDAVSAVAGNEELRSGQL 71

Query: 79 YFLLPMDMLYSVLTDEEM 96
          YF+LP+  L   L  EEM
Sbjct: 72 YFVLPLTWLNHPLRAEEM 89



>AT1G28190.1 | chr1:9847015-9847815 REVERSE LENGTH=267
          Length = 266

 Score = 49.7 bits (117), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 40/76 (52%)

Query: 17  SSSTACKIIHVDGTVTRLARPVRASELMVDYPGQFVCDSGRLAVGCRVPGVAADELLEPR 76
           S+    K++  DG++    RPV  SEL  D+P   +C S  L +G + P ++  E L+  
Sbjct: 34  SNGGRIKLVRSDGSLQVYDRPVVVSELTKDFPKHKICRSDLLYIGQKTPVLSETETLKLG 93

Query: 77  RAYFLLPMDMLYSVLT 92
             YFLLP D   + L+
Sbjct: 94  LNYFLLPSDFFKNDLS 109



>AT4G37240.1 | chr4:17524546-17525052 FORWARD LENGTH=169
          Length = 168

 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 40/74 (54%)

Query: 23 KIIHVDGTVTRLARPVRASELMVDYPGQFVCDSGRLAVGCRVPGVAADELLEPRRAYFLL 82
          K+I  DG +   A PV+   +++ YP  F+C+S  +     V  ++ADE L+  + YF L
Sbjct: 16 KLILQDGRMMEFANPVKVGYVLLKYPMCFICNSDDMDFDDAVAAISADEELQLGQIYFAL 75

Query: 83 PMDMLYSVLTDEEM 96
          P+  L   L  EEM
Sbjct: 76 PLCWLRQPLKAEEM 89



>AT5G12340.1 | chr5:3992948-3993610 REVERSE LENGTH=221
          Length = 220

 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 34/54 (62%), Gaps = 1/54 (1%)

Query: 40 ASELMVDYPGQFVCDSGRLAVGCRVPGVAADELLEPRRAYFLLPMDML-YSVLT 92
          A E+M ++P Q VC +    +G ++P +A D+ L P + YF+LP++   Y +LT
Sbjct: 41 AGEIMFEFPDQIVCHADSFYIGRQIPALAMDDYLIPGQTYFVLPIERFQYKILT 94



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.322    0.139    0.439 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,471,333
Number of extensions: 99125
Number of successful extensions: 203
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 203
Number of HSP's successfully gapped: 5
Length of query: 201
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 107
Effective length of database: 8,529,465
Effective search space: 912652755
Effective search space used: 912652755
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 109 (46.6 bits)