BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0118300 Os01g0118300|AK065788
         (254 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G15110.2  | chr1:5199594-5201988 FORWARD LENGTH=454            367   e-102

>AT1G15110.2 | chr1:5199594-5201988 FORWARD LENGTH=454
          Length = 453

 Score =  367 bits (943), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 171/213 (80%), Positives = 188/213 (88%)

Query: 1   EILFDEFVIAHILGWWGKAIMIRNQPLLWVLSIGFELMELTFRHMLPNFNECWWDSIVLD 60
           + +FDEF +AHI GWWGKAI+IRNQPLLWVLSIGFEL+E+TFRHMLPNFNECWWDSIVLD
Sbjct: 172 DTVFDEFFLAHIFGWWGKAILIRNQPLLWVLSIGFELLEVTFRHMLPNFNECWWDSIVLD 231

Query: 61  ILICNWFGIWAGMKTVRYFDGRTYEWVGLSRQPNIISKVKRTLGQFTPAQWDKDEWYPLL 120
           ILICNWFGIWAGM TVRYFDG+TYEWVG+SRQPNII KVKRTLGQFTPA WDKDEW+PL 
Sbjct: 232 ILICNWFGIWAGMYTVRYFDGKTYEWVGISRQPNIIGKVKRTLGQFTPAHWDKDEWHPLQ 291

Query: 121 GPWRFIQVLSLCIVFMIVELNTFFLKFCLWIPPRNPLIVYRLVLWWLIAIPTIREYNTYL 180
           GPWRFIQVL+LCI+F+ VELNTFFLKF LWIPPRNP+I+YRL+LWWLIAIPT REYN+YL
Sbjct: 292 GPWRFIQVLTLCIIFLTVELNTFFLKFSLWIPPRNPVILYRLILWWLIAIPTTREYNSYL 351

Query: 181 QDRKPVKKVGSFCWXXXXXXXXXXXXXXKFGHG 213
           QDRKPVKKVG+FCW              KFG G
Sbjct: 352 QDRKPVKKVGAFCWLSLGICIVELLICIKFGSG 384



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.332    0.146    0.535 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,649,478
Number of extensions: 224641
Number of successful extensions: 624
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 624
Number of HSP's successfully gapped: 1
Length of query: 254
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 158
Effective length of database: 8,474,633
Effective search space: 1338992014
Effective search space used: 1338992014
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 110 (47.0 bits)