BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0111400 Os01g0111400|AK066455
         (701 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G18560.1  | chr1:6385614-6388005 FORWARD LENGTH=691            615   e-176
AT3G42170.1  | chr3:14321838-14323928 FORWARD LENGTH=697          125   1e-28

>AT1G18560.1 | chr1:6385614-6388005 FORWARD LENGTH=691
          Length = 690

 Score =  615 bits (1585), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 310/698 (44%), Positives = 443/698 (63%), Gaps = 50/698 (7%)

Query: 6   LTDMTLLPSVDPDDALSGMAATSSAPAQGAKPK-KKTMKSLYLQFFDTAPDGKSRVCKLC 64
           + DMTL+P  DP D   G    SS  +    PK KKTM S+YL++F+TAPD K+R CK C
Sbjct: 20  MMDMTLVPHSDPIDIGLG----SSDKSNSVPPKRKKTMTSVYLKYFETAPDSKTRKCKFC 75

Query: 65  KKSYCMTTATGNLGKHLNNRHPGYCQLSEGEATQSTTPTSMVSRAKRSQPLARTRXXXXX 124
            +SY + TATGNLG+HL NRHPGY + +    T S+ P +  +  K SQ  ++       
Sbjct: 76  GQSYSIATATGNLGRHLTNRHPGYDKAAADVVTSSSVPQTPPAVVKPSQSQSKV------ 129

Query: 125 XXXXXXXXXXXXXXXXXXXXKVRHQPKAKPAIDIDHVNXXXXXXXXXXXXPTSTLEDSML 184
                                        P +D DH+N            P ST++++ L
Sbjct: 130 -----------------------------PQLDYDHLNWLVLKWLALSSLPPSTVDETWL 160

Query: 185 IDSCRYLNPPVQLWPKEKAHEIVLQVFRSMKEDVKASLQCVSSRFSITLDFWTSYEQIVY 244
            +S ++L P +QLWP EK   I+ +VF SM+ DVK +L+ + S+ S+TL FW SYE I Y
Sbjct: 161 GNSFKFLKPSIQLWPAEKYKAILDEVFTSMRGDVKTTLEHIQSKVSVTLSFWNSYENIFY 220

Query: 245 LSVKCYWIDEGWALRKVLLDVRRIPYPCTGPEILQVLMNVLHEFNIDSKILACTHNNSQH 304
           +SV   WIDE W+  ++LLD+ RIPYP  G EI   L+ VL  + I+ +IL CTH+NS++
Sbjct: 221 MSVTGQWIDENWSSHRLLLDICRIPYPSGGSEIYNSLLKVLKTYAIEDRILCCTHDNSEN 280

Query: 305 AIHACHELRQELESRK-LPFCYIPCAARMLKIIIKDGLENVRPVLSKIREFVLETNSNQD 363
           AIHACH L++  + +K LPFCYIPCAA+ L  II +GL  ++P++SK+REF  E N++ +
Sbjct: 281 AIHACHSLKEYFDGQKVLPFCYIPCAAQTLNDIIDEGLATIKPIISKVREFTQELNASTE 340

Query: 364 MMEDFMHWTEVYQEGSWKLPFDHSSNWSGDYNMLDVVKKAPNAMDNTIKKFEGVFGPRDW 423
           + +DF+  T  YQEG+WKLP D SS WSG+Y M++++ KA  ++D+ I+K E     R  
Sbjct: 341 LSDDFIQLTTAYQEGNWKLPIDASSRWSGNYQMVNILCKASKSLDSVIRKNEDALENR-M 399

Query: 424 VLSSTEKSAVNSLHSY--LEPFYKTTTNLCTCKIPTVGLVFFFMDHVIELINVCHDSTRQ 481
           +LSS EK+AV  +H+Y  L+ F+KTT ++CT K  TVGL   FMD++ E+I  C  S   
Sbjct: 400 MLSSVEKNAVTIVHNYLDLDSFHKTTNDMCTNKDLTVGLALLFMDNISEMITTCQKSCHN 459

Query: 482 -DWLKKIASDMSETAHNFASQAYNIYTFTAAILDPRIKGELIPETLNSTSNLEDARNQFV 540
            DWL+  A  M++ A ++ +Q  N++T+  AILDPRIK E IPET+N  S +++AR+ F+
Sbjct: 460 PDWLRTCAESMAQKARSYNTQVCNVFTYITAILDPRIKTEYIPETINLESYIDEARSHFI 519

Query: 541 RDYSSTF--EAVGNGYNTQDTTDGGDAFSFAEEIVRKRRRVSMI-TAADELSQYLAEPPA 597
           R+YSS+    ++ +GY  Q+  +GG   SFAEEI R++RR SM     DEL+QYL+E   
Sbjct: 520 RNYSSSHFTSSMTSGYRPQEVDEGGGNISFAEEIARRKRRGSMSNNVVDELTQYLSESIV 579

Query: 598 PISTDALEWWKGHSSRYPRLSLMARDFLAIQGTSLDPEELFTSKGDSMRKQHYCLPLSSI 657
           P+ TD L+WWK +S RYPRLS MARDFLA+Q TS  PEE+F  KG+ + KQ YC+P  S 
Sbjct: 580 PMQTDVLDWWKVNSGRYPRLSNMARDFLAVQATSAAPEEIFCGKGEEIDKQKYCMPHDST 639

Query: 658 QATMCVKSWMQSGYQFNFQSTIIDFERLVESA--VAPD 693
           Q+ +C++SW+++G +  ++ + ID+ERL+E A  VA D
Sbjct: 640 QSVICIRSWIEAGMKLKYKCSEIDYERLMELAATVAAD 677



>AT3G42170.1 | chr3:14321838-14323928 FORWARD LENGTH=697
          Length = 696

 Score =  125 bits (313), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 117/480 (24%), Positives = 214/480 (44%), Gaps = 37/480 (7%)

Query: 208 LQVFRSMKEDVKASLQCVSSRFSITLDFWTSYEQIVYLSVKCYWIDEGWALRKVLLDVRR 267
           +  + + K++V  SL+ +  RF +TLDFWTS   + Y+ +  ++ID  W ++K LL+V  
Sbjct: 212 VATYLAEKQNVMKSLEGIPGRFCLTLDFWTSKLTLGYVFITAHYIDSDWKIQKKLLNVLM 271

Query: 268 IPYPCTGPEILQVLMNVLHEFNIDSKILACTHNNSQHAIHACHELRQELESRKLP----- 322
             YP     +   + N + E+ ++ K+   T N+   +  A   +R +L   K P     
Sbjct: 272 ESYPEADEALSLAVANCVSEWGLEGKLFNVTFNHPA-SNSAVENIRPQL-CIKNPGILDG 329

Query: 323 -FCYIPCAARMLKIIIKDGLENVRPVLSKIREFVLETNSNQDMMEDFMHWTEVYQEGSWK 381
                 C AR    + KD LE  + V+  IR+ V    +++   E F    E  Q  S K
Sbjct: 330 QLVIGNCVARTFGSLAKDVLEKGKDVIKNIRDSVKHVKTSESHEERFTELKEQLQVPSEK 389

Query: 382 -LPFDHSSNWSGDYNML---DVVKKAPNAMDNTIKKFEGVFGPRDWVLSSTEKSAVNSLH 437
            L  D  + W+  Y ML     +K+  + +D     ++      DW         V +L 
Sbjct: 390 VLSLDDQTQWNTTYMMLVAASELKEVFSCLDTADPDYKKPPSAEDW-------RHVEALC 442

Query: 438 SYLEPFYKTTTNLCTCKIPTVGLVFFFMDHVIELINVCHDSTRQD-WLKKIASDMSETAH 496
           ++L+P ++  + L +   P+   V FF +      ++      +D ++  IA  M E   
Sbjct: 443 TFLKPLFEAVSTLQSTGNPSA--VTFFHEVWKTQSDLSRAIAGEDPFVTGIAKTMQEKVD 500

Query: 497 NFASQAYNIYTFTAAILDPRIKGELIPETLNSTSNLEDARN-----QFVRDYSSTFEAVG 551
            +     ++    A ++DPR K +L+  + +     +  +N       + +  + + A+ 
Sbjct: 501 KYWRDC-SLVLAMAVVMDPRFKMKLVEFSFSKIFGEDAGKNIKTVDDGIHELFTEYMALP 559

Query: 552 NGYNTQDTTDGG--DAFSFAEEIVRKRRRVSMITAADELSQYLAEP--PAPISTDALEWW 607
           +  NT  T++GG  D  S  +  + +    ++     EL QYL E   P     D L+WW
Sbjct: 560 SPQNT--TSEGGKADGLSDFDTYIMETTGQNL---KSELDQYLDETLLPRVQEFDVLDWW 614

Query: 608 KGHSSRYPRLSLMARDFLAIQGTSLDPEELFTSKGDSMRKQHYCLPLSSIQATMCVKSWM 667
           K +  +YP LS MARD L+I  ++   + +F  +   M +    L   +++A +C + W+
Sbjct: 615 KQNKLKYPTLSKMARDILSIPVSAAAFDYVFDMEPREMDEYKTSLRPETVEALICAREWL 674



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.131    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 14,837,375
Number of extensions: 603602
Number of successful extensions: 1459
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1450
Number of HSP's successfully gapped: 3
Length of query: 701
Length of database: 11,106,569
Length adjustment: 106
Effective length of query: 595
Effective length of database: 8,200,473
Effective search space: 4879281435
Effective search space used: 4879281435
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 115 (48.9 bits)