BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0107900 Os01g0107900|AK058708
         (257 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G27510.1  | chr1:9554945-9558293 REVERSE LENGTH=652            289   1e-78
AT4G33630.1  | chr4:16155560-16159094 FORWARD LENGTH=685          201   2e-52

>AT1G27510.1 | chr1:9554945-9558293 REVERSE LENGTH=652
          Length = 651

 Score =  289 bits (739), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 149/267 (55%), Positives = 196/267 (73%), Gaps = 12/267 (4%)

Query: 1   NKEDAGAKS-YVRVPAEINNLEKDSFELYIPGKGS-DRDLADTKAAKQKVADMAAKLASE 58
           N ED+      VRV A I + E+DSF L++PG+   D D    + +K++V  +AA+  S+
Sbjct: 387 NIEDSSIDDEIVRVSANIMDTERDSFILHVPGRSKRDIDTRKNRVSKEQVTALAAQGLSD 446

Query: 59  LMPSDVAKALWGTTKSSSKINKEVQELLKLTLSKARV--KLTENTIFNRIITDSNGSDPF 116
           L+P +VA+A WG  K+S K++K V E++KL +++A+    L+E T FNRIIT  +  DPF
Sbjct: 447 LLPPEVAEAFWGE-KASLKVSKHVHEIVKLAINQAQKGNHLSEYTAFNRIITPESNLDPF 505

Query: 117 SGLYVGAFSPYGPEVVQLRRKFGHW------NSTDEVEFFEYVEAVKLTGDLSVPAGQIT 170
            GLYVGAF PYG E+VQL+RK+G W      NS+D +EFFEYVEAVKLTGD +VPAGQ+T
Sbjct: 506 DGLYVGAFGPYGTEIVQLKRKYGRWDDAEGSNSSD-IEFFEYVEAVKLTGDPNVPAGQVT 564

Query: 171 FRAKIGKGKRLENRGAYPEEFGVIASYKGQGRIAQPGFKNPRWVDGELLVLNGKSTIPHL 230
           FRA+IG G R+ N G +PEE GV+ASY+GQG+IA  GFK PRWV+G+LL LNGK   P++
Sbjct: 565 FRARIGNGSRMTNHGLFPEELGVLASYRGQGKIADFGFKKPRWVEGKLLKLNGKGMGPYV 624

Query: 231 GGAELGFLYSVPEQSFLVLFDRLKLPE 257
            GA+LGFLY  PEQSFLVLF+RL+LPE
Sbjct: 625 KGADLGFLYIGPEQSFLVLFNRLRLPE 651



>AT4G33630.1 | chr4:16155560-16159094 FORWARD LENGTH=685
          Length = 684

 Score =  201 bits (512), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 123/265 (46%), Positives = 164/265 (61%), Gaps = 28/265 (10%)

Query: 8   KSYVRVPAEINNLEKDSFELYIP-------GKGSD-RDLADTKAAKQKVADMAAKLASEL 59
           K  +R PA + ++E  SF L +         KG +   L D K ++Q      ++   E 
Sbjct: 429 KESLRSPANLESVENSSFYLRLEKDLNVKESKGVEGTTLVDGKGSRQ------SRRRIEN 482

Query: 60  MPSDVAKALWGTTKSSSKINKEVQELLKLTLSKA--RVKLTENTIFNRI-ITDSNGSDPF 116
           +  D+AK++    K S K+ K+V ELL LTLS+A  R +L+  T F RI +T S   DP 
Sbjct: 483 IMGDLAKSIEKEKKISVKMLKDVGELLSLTLSQAQNRQQLSGLTKFRRIDVTPS--LDPL 540

Query: 117 SGLYVGAFSPYGPEVVQLRRKFGHWNSTDE------VEFFEYVEAVKLTGDLSVPAGQIT 170
            GLY+GA   Y  EV+ L+RKFG W    E      +EF+EYVEAVKLTGD  VPAG++ 
Sbjct: 541 DGLYIGAHGLYTSEVIHLKRKFGQWKGGKESKKPTDIEFYEYVEAVKLTGDPYVPAGKVA 600

Query: 171 FRAKIGKGKRLENRGAYPEEFGVIASYKGQGRIAQPGFKNPRWVDGELLVLNGKSTIPHL 230
           FRAKIG+   L ++G  PEEFGVIA YKGQGR+A PGF+NPRWVDGEL++L+GK      
Sbjct: 601 FRAKIGRRYELPHKGLIPEEFGVIARYKGQGRLADPGFRNPRWVDGELVILDGKYV---K 657

Query: 231 GGAELGFLYSVPEQSFLVLFDRLKL 255
           GG  +GF+Y  PE  F++ F+RL+L
Sbjct: 658 GGPVVGFVYWAPEYHFVMFFNRLRL 682



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.314    0.134    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,542,988
Number of extensions: 236193
Number of successful extensions: 493
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 487
Number of HSP's successfully gapped: 2
Length of query: 257
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 161
Effective length of database: 8,474,633
Effective search space: 1364415913
Effective search space used: 1364415913
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 110 (47.0 bits)