BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0106900 Os01g0106900|AK099702
(473 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G62790.2 | chr5:25214358-25217289 REVERSE LENGTH=498 781 0.0
>AT5G62790.2 | chr5:25214358-25217289 REVERSE LENGTH=498
Length = 497
Score = 781 bits (2016), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 398/496 (80%), Positives = 426/496 (85%), Gaps = 26/496 (5%)
Query: 1 MALKVVSFPGDLAAVSFLDSNRGGAFNQLKVDLPFQTRDRRAVSLRRTCCSMQ----QAP 56
M L +S P + A+SFLD++R +L + R++ + CS++ Q P
Sbjct: 1 MTLNSLS-PAESKAISFLDTSRFNPIPKLSGGFSLRRRNQGRGFGKGVKCSVKVQQQQQP 59
Query: 57 PPAWPGRAVVEPGRRSWDGPKPISIVGSTGSIGTQTLDIVAENPDKFRVVALAAGSNVTL 116
PPAWPGRAV E R+SWDGPKPISIVGSTGSIGTQTLDIVAENPDKFRVVALAAGSNVTL
Sbjct: 60 PPAWPGRAVPEAPRQSWDGPKPISIVGSTGSIGTQTLDIVAENPDKFRVVALAAGSNVTL 119
Query: 117 LADQ---------------------VKTFKPKLVAVRNESLVDELKEALADCDWKPEIIP 155
LADQ ++ FKP LVAVRNESL++ELKEALAD D+K EIIP
Sbjct: 120 LADQFSGSIISKIVLTRYVSDQTREIRRFKPALVAVRNESLINELKEALADLDYKLEIIP 179
Query: 156 GEQGVIEVARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAQ 215
GEQGVIEVARHP+AVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLA
Sbjct: 180 GEQGVIEVARHPEAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAN 239
Query: 216 KHKVKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVDKLKEVKVADALKHP 275
KH VKILPADSEHSAIFQCIQGLPEGALR+IILTASGGAFRDWPV+KLKEVKVADALKHP
Sbjct: 240 KHNVKILPADSEHSAIFQCIQGLPEGALRKIILTASGGAFRDWPVEKLKEVKVADALKHP 299
Query: 276 NWNMGKKITVDSATLFNKGLEVIEAHYLFGAEYDDIEIVIHPQSIIHSMIETQDSSVLAQ 335
NWNMGKKITVDSATLFNKGLEVIEAHYLFGAEYDDIEIVIHPQSIIHSMIETQDSSVLAQ
Sbjct: 300 NWNMGKKITVDSATLFNKGLEVIEAHYLFGAEYDDIEIVIHPQSIIHSMIETQDSSVLAQ 359
Query: 336 LGWPDMRIPILYTMSWPDRIYCSEVTWPRLDLCKLGSLTFKAPDNVKYPSMDLAYAAGRA 395
LGWPDMR+PILYTMSWPDR+ CSEVTWPRLDLCKLGSLTFK PDNVKYPSMDLAYAAGRA
Sbjct: 360 LGWPDMRLPILYTMSWPDRVPCSEVTWPRLDLCKLGSLTFKKPDNVKYPSMDLAYAAGRA 419
Query: 396 GGTMTGVLSAANEKAVELFIDEKIGYLDIFKVVELTCDAHRNELVTRPSLEEIIHYDLWA 455
GGTMTGVLSAANEKAVE+FIDEKI YLDIFKVVELTCD HRNELVT PSLEEI+HYDLWA
Sbjct: 420 GGTMTGVLSAANEKAVEMFIDEKISYLDIFKVVELTCDKHRNELVTSPSLEEIVHYDLWA 479
Query: 456 REYAASLQPSTGLSPV 471
REYAA++Q S+G PV
Sbjct: 480 REYAANVQLSSGARPV 495
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.136 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 10,212,286
Number of extensions: 426106
Number of successful extensions: 959
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 957
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 371
Effective length of database: 8,310,137
Effective search space: 3083060827
Effective search space used: 3083060827
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 113 (48.1 bits)