BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0106800 Os01g0106800|AK059300
(126 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G42830.1 | chr3:14929714-14930678 REVERSE LENGTH=116 178 7e-46
AT5G20570.2 | chr5:6956905-6958221 REVERSE LENGTH=143 174 7e-45
AT3G05870.1 | chr3:1753961-1754802 FORWARD LENGTH=88 68 1e-12
>AT3G42830.1 | chr3:14929714-14930678 REVERSE LENGTH=116
Length = 115
Score = 178 bits (451), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 84/89 (94%), Positives = 86/89 (96%)
Query: 38 KRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAF 97
KRFE+KKW+AVALWAWDIVVDNCAICRNHIMDLCIEC ANQASATSEECTVAWGVCNHAF
Sbjct: 27 KRFELKKWSAVALWAWDIVVDNCAICRNHIMDLCIECLANQASATSEECTVAWGVCNHAF 86
Query: 98 HFHCISRWLKTRQVCPLDNSEWEFQKYGH 126
HFHCISRWLKTRQVCPLD EWEFQKYGH
Sbjct: 87 HFHCISRWLKTRQVCPLDVCEWEFQKYGH 115
>AT5G20570.2 | chr5:6956905-6958221 REVERSE LENGTH=143
Length = 142
Score = 174 bits (442), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 89/116 (76%), Positives = 90/116 (77%), Gaps = 24/116 (20%)
Query: 35 KPNKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAW---- 90
K KRFEIKKW+AVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAW
Sbjct: 27 KKAKRFEIKKWSAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWEDDQ 86
Query: 91 --------------------GVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 126
GVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
Sbjct: 87 NNCNKYFCILDCSMKDDHLEGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 142
>AT3G05870.1 | chr3:1753961-1754802 FORWARD LENGTH=88
Length = 87
Score = 67.8 bits (164), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 48/89 (53%), Gaps = 8/89 (8%)
Query: 38 KRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAF 97
K I W+AVA W WD + C ICR C +C+ ++C + WG CNHAF
Sbjct: 4 KILRILLWHAVASWTWDAQDETCGICRMAFDGCCPDCKL-----PGDDCPLIWGACNHAF 58
Query: 98 HFHCISRWLKTRQV---CPLDNSEWEFQK 123
H HCI +W+ ++ CP+ EW+F++
Sbjct: 59 HLHCILKWVNSQTSQAHCPMCRREWQFKE 87
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.325 0.132 0.480
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,472,969
Number of extensions: 82474
Number of successful extensions: 541
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 543
Number of HSP's successfully gapped: 3
Length of query: 126
Length of database: 11,106,569
Length adjustment: 87
Effective length of query: 39
Effective length of database: 8,721,377
Effective search space: 340133703
Effective search space used: 340133703
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 105 (45.1 bits)