BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0106600 Os01g0106600|AK061314
         (292 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G75260.1  | chr1:28247854-28249395 FORWARD LENGTH=514           52   5e-07

>AT1G75260.1 | chr1:28247854-28249395 FORWARD LENGTH=514
          Length = 513

 Score = 51.6 bits (122), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 55/115 (47%), Gaps = 23/115 (20%)

Query: 131 LRKDLKAGLAGMLSAASHGQ-QGTSIITLAGDNKGASMKI------------------SS 171
           +++D++ G++ +    S+G  +  S+ TL G+NKGA+M I                  S+
Sbjct: 320 IKEDIRDGISKLTWGKSNGDDKSVSVYTLTGENKGATMGIGSEKDKKDGEVHIRRGYRSN 379

Query: 172 PAPGSKGAGDD----KRSSADGKGGVKAMINSNVQSINNSLLLHSSCSGGDLGVH 222
           P   S     +    K   A+ +    A IN N Q INNS+++ SS S  D GVH
Sbjct: 380 PDESSNTTATETENPKDDEAEEEASFTAYINGNTQGINNSIVVESSVSENDPGVH 434



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.307    0.126    0.365 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,355,490
Number of extensions: 132638
Number of successful extensions: 506
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 505
Number of HSP's successfully gapped: 2
Length of query: 292
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 194
Effective length of database: 8,419,801
Effective search space: 1633441394
Effective search space used: 1633441394
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 111 (47.4 bits)