BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0105800 Os01g0105800|AK066672
         (138 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G16710.3  | chr2:7248294-7250013 FORWARD LENGTH=144            192   6e-50
AT2G36260.1  | chr2:15202786-15203500 FORWARD LENGTH=110          177   1e-45
AT1G10500.1  | chr1:3460160-3461340 REVERSE LENGTH=181             79   8e-16
AT5G03905.1  | chr5:1052728-1054041 FORWARD LENGTH=159             65   2e-11

>AT2G16710.3 | chr2:7248294-7250013 FORWARD LENGTH=144
          Length = 143

 Score =  192 bits (487), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 88/117 (75%), Positives = 102/117 (87%), Gaps = 6/117 (5%)

Query: 23  QKQALALTDAAASRIRQLLSLRHRPYLRLGVKARGCNGLSYTLNYA------DEKGKFDE 76
           +KQ L LTD AASR+  LL  R +P+LRLGVKARGCNGLSYTLNYA      DEKGKFDE
Sbjct: 19  RKQVLTLTDEAASRVHHLLQQRQKPFLRLGVKARGCNGLSYTLNYAGKTSGNDEKGKFDE 78

Query: 77  VVEDKGVKVLIDPKALMHVIGTKMDYVDDPLRSEFVFINPNSKGECGCGESFMTTSS 133
           +VE+KGV++L++PKALMHVIGTKMD+VDD LRSEFVFINPNS+G+CGCGESFMTTS+
Sbjct: 79  LVEEKGVRILVEPKALMHVIGTKMDFVDDKLRSEFVFINPNSQGQCGCGESFMTTST 135



>AT2G36260.1 | chr2:15202786-15203500 FORWARD LENGTH=110
          Length = 109

 Score =  177 bits (450), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 80/109 (73%), Positives = 97/109 (88%), Gaps = 1/109 (0%)

Query: 23  QKQALALTDAAASRIRQLLSLRHRPYLRLGVKARGCNGLSYTLNYADEKGKFDEVVEDKG 82
           +KQ LAL+D AA+RIRQLL  + +P+LRL V+A+GCNGLSY LNYA EKGKFDEVVE+KG
Sbjct: 2   RKQVLALSDTAAARIRQLLQHQQKPFLRLAVEAKGCNGLSYVLNYAQEKGKFDEVVEEKG 61

Query: 83  VKVLIDPKALMHVIGTKMDYVDDPLRSEFVFINPNSKGECGCGESFMTT 131
           VK+L+DPKA+MHVIGT+MD+VDD LRSEFVF+NPN+  +CGCGESF TT
Sbjct: 62  VKILVDPKAVMHVIGTEMDFVDDKLRSEFVFVNPNAT-KCGCGESFTTT 109



>AT1G10500.1 | chr1:3460160-3461340 REVERSE LENGTH=181
          Length = 180

 Score = 79.0 bits (193), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 38/108 (35%), Positives = 65/108 (60%), Gaps = 3/108 (2%)

Query: 24  KQALALTDAAASRIRQLLSLRHRPY-LRLGVKARGCNGLSYTLNYADEKGKF--DEVVED 80
           K A++L++ A   + ++ S R     LR+GVK  GC+G+SYT+++ +       D  +E 
Sbjct: 69  KPAISLSENALKHLSKMRSERGEDLCLRIGVKQGGCSGMSYTMDFENRANARPDDSTIEY 128

Query: 81  KGVKVLIDPKALMHVIGTKMDYVDDPLRSEFVFINPNSKGECGCGESF 128
           +G  ++ DPK+++ + G ++DY D  +   F F NPN+   CGCG+SF
Sbjct: 129 QGFTIVCDPKSMLFLFGMQLDYSDALIGGGFSFSNPNATQTCGCGKSF 176



>AT5G03905.1 | chr5:1052728-1054041 FORWARD LENGTH=159
          Length = 158

 Score = 64.7 bits (156), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 36/104 (34%), Positives = 56/104 (53%), Gaps = 2/104 (1%)

Query: 29  LTDAAASRIRQLLSLR-HRPYLRLGVKARGCNGLSYTLNYADEKGKFDEVVEDKGVKVLI 87
           L+D    R+++L S    +  LRLGV+  GC+G  Y     +     D V E  GVK+++
Sbjct: 53  LSDNCIRRMKELQSSEPEKKMLRLGVETGGCSGFQYKFELDNRTNPDDRVFEKNGVKLVV 112

Query: 88  DPKALMHVIGTKMDYVDDPLRSEFVF-INPNSKGECGCGESFMT 130
           D  +   V G  +DY ++ +R+ FV  +NP++ G C C  SFM 
Sbjct: 113 DNVSYDLVKGATIDYEEELIRAAFVVAVNPSAVGGCSCKSSFMV 156



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.134    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,543,536
Number of extensions: 97910
Number of successful extensions: 234
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 230
Number of HSP's successfully gapped: 4
Length of query: 138
Length of database: 11,106,569
Length adjustment: 88
Effective length of query: 50
Effective length of database: 8,693,961
Effective search space: 434698050
Effective search space used: 434698050
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 106 (45.4 bits)