BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0104400 Os01g0104400|AK071375
         (268 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G39050.1  | chr2:16303427-16305336 FORWARD LENGTH=318          214   4e-56

>AT2G39050.1 | chr2:16303427-16305336 FORWARD LENGTH=318
          Length = 317

 Score =  214 bits (545), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 107/193 (55%), Positives = 132/193 (68%), Gaps = 5/193 (2%)

Query: 76  VVHVSHEVSDHQRPTPHYGGSEYISPVQETRPYHGGGGAPPVTHRIYCKAGEDNYSLAVR 135
           V HV+H  S+     P      Y  P +   P +  G A   T ++Y KA E NY+L +R
Sbjct: 130 VTHVAHHSSNQ----PQSSSGVYHKPDENRLPDNLAGLAGRATVKVYSKA-EPNYNLTIR 184

Query: 136 DGKVCLVRSDRDDHTQHWVKDMKYSTRVKDEEGYPAMALVNKATGDALKHSIGQSHPVRL 195
           DGKV L  +D  D  QHW KD KYST+VKD +G+P  ALVNKATG+A+KHS+G +HPV L
Sbjct: 185 DGKVILAPADPSDEAQHWYKDEKYSTKVKDADGHPCFALVNKATGEAMKHSVGATHPVHL 244

Query: 196 VRYNPEYMDESVLWTESRDVGSGFRCIRMVNNIYLNFDALHGDKDHGGVRDGTTLVLWEW 255
           +RY P+ +DESVLWTES+D G G+R IRMVNN  LN DA HGD   GGVRDGTT+VLW+W
Sbjct: 245 IRYVPDKLDESVLWTESKDFGDGYRTIRMVNNTRLNVDAYHGDSKSGGVRDGTTIVLWDW 304

Query: 256 CEGDNQRWKIVPW 268
            +GDNQ WKI P+
Sbjct: 305 NKGDNQLWKIFPF 317



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.136    0.447 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,645,503
Number of extensions: 245284
Number of successful extensions: 424
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 424
Number of HSP's successfully gapped: 1
Length of query: 268
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 171
Effective length of database: 8,447,217
Effective search space: 1444474107
Effective search space used: 1444474107
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 111 (47.4 bits)