BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0103700 Os01g0103700|AK070525
         (521 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G20060.1  | chr4:10854790-10859330 REVERSE LENGTH=1135          60   2e-09

>AT4G20060.1 | chr4:10854790-10859330 REVERSE LENGTH=1135
          Length = 1134

 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 96/420 (22%), Positives = 168/420 (40%), Gaps = 48/420 (11%)

Query: 11  KLKFDPTEFSSKKEVFIVRNIILSTLKFANTCHNMLSKTPGASCNLYDRIKELIECVQQN 70
           +L F    +  K+ V +    + S  KF       L         +Y+++K + E V   
Sbjct: 484 ELLFGVINYKDKRGVVMRSEFLASIHKFLIVFLENLEGDDNLLSEIYEKVKHITEFVSSC 543

Query: 71  ASQYCSTYEFFHLIMCACISWYACKTRDGNQESGDPTEQPDIFSSPSIWLTQELCAIRIT 130
           +     T   F L++ + I W      D    SG  +   DI       +   + ++  +
Sbjct: 544 SFIDFHTQMIFTLLLHSPILW-GFSVNDDTGNSG-VSLVADI-------VNYGIVSLDCS 594

Query: 131 KMLFRKQRYWDAYMSAMYCCREGLWFVVSFVFRKXXXXXXXXXXXXXXXXXXXISAGEIE 190
             +  ++ YW AY + +Y  R G W   + +F +                   +S  E +
Sbjct: 595 NQILMERNYWPAYRAGVYAARLGAWVTSAMIFDQLKTNVQSDINCCWLKSLTYLSHAEGK 654

Query: 191 MKLLLFPSAIIKLVSELKTDCDLHESFYCVETNVDSSLAGSSELHGSQAKITDICSKTFL 250
            +LLL PS  +KLV+ LK +       Y  E + D+S   +  L   +A +         
Sbjct: 655 FQLLLTPSDSVKLVNWLKNNG------YLPELSKDASGEFAHCLALREAYMN------LQ 702

Query: 251 ATDHLLSNTSSSHELF-FQRWFISLRASFLEILADF---LGILTAHL--TDQRDESHHDA 304
           ++  +L N  +S  +F FQ WF+ L+   LE + +    LG+L   L   +Q +E     
Sbjct: 703 SSLGMLGNIIASSGVFCFQTWFLVLKTRVLETVLELVECLGLLNQDLRNKNQVEEILLTG 762

Query: 305 IGDHSSVPREHNNSQLLALVNCSLRLSELAHSYDLLAVSHGDMDRQSFSSIARLAFMCSL 364
                 +PR             S++L +LA  +D+LA    D+D  S S I  ++  CS+
Sbjct: 763 CDSLQQLPR------------ISIQLQKLAKEFDMLATCFIDIDDSSSSIITTISLSCSV 810

Query: 365 LAFCIAFSVDFSKVHSSVESCRLPERFSHAS-----VVQDLHERVDRTDSQIVSQLQQLM 419
           LAF     +       S +   +P  F+  S     +V+DL  R+ + D  +  +L  L+
Sbjct: 811 LAFAAGIVLFLPGF--SFQEALVP--FTSQSGLCSRLVEDLVRRLWKVDPNVCEKLNILV 866



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.325    0.135    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 10,812,676
Number of extensions: 422742
Number of successful extensions: 1165
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1163
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 418
Effective length of database: 8,282,721
Effective search space: 3462177378
Effective search space used: 3462177378
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 114 (48.5 bits)