BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0102300 Os01g0102300|AK067320
         (257 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G24930.1  | chr4:12821496-12822389 REVERSE LENGTH=226          158   2e-39

>AT4G24930.1 | chr4:12821496-12822389 REVERSE LENGTH=226
          Length = 225

 Score =  158 bits (400), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 78/141 (55%), Positives = 96/141 (68%), Gaps = 12/141 (8%)

Query: 102 GRIRACPSTNPGCVSTNPTVGASCSLASPLIVPANTPTDKAAASLREAILKTQRNAVIKA 161
           G+IR CPSTNPGCVSTNPT   S S + PL +P  T T      L+EAI+ TQ+N     
Sbjct: 90  GKIRPCPSTNPGCVSTNPT---SSSFSFPLTIP-ETDTQDPIEKLKEAIMSTQKNPKFVV 145

Query: 162 DEETAYGHYIQAEVDGGA-GRDVMEFLLKESQSQSQEVVAAYRCVATKVIFVYPFTTAVG 220
            E+T YG Y++AEV+GG   RDVMEFL+K+        V AYRC+ATKV FVYPFTTA G
Sbjct: 146 LEDTPYGRYVEAEVEGGGFSRDVMEFLVKQD-------VVAYRCMATKVTFVYPFTTAFG 198

Query: 221 DSRGQSQRIAAVAQELGWYAP 241
           DS+GQ +R+  +  +LGWYAP
Sbjct: 199 DSKGQEERLKKLIDQLGWYAP 219



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.315    0.128    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,798,300
Number of extensions: 127087
Number of successful extensions: 373
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 370
Number of HSP's successfully gapped: 1
Length of query: 257
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 161
Effective length of database: 8,474,633
Effective search space: 1364415913
Effective search space used: 1364415913
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 110 (47.0 bits)