BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0100800 Os01g0100800|AK122012
(356 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G24265.3 | chr1:8600613-8603630 FORWARD LENGTH=384 164 8e-41
AT1G24267.2 | chr1:8604451-8607241 REVERSE LENGTH=345 127 1e-29
AT1G04960.2 | chr1:1408021-1410424 REVERSE LENGTH=335 110 1e-24
AT1G27000.1 | chr1:9374068-9376422 FORWARD LENGTH=305 97 1e-20
AT2G02730.1 | chr2:765280-767336 REVERSE LENGTH=277 84 1e-16
>AT1G24265.3 | chr1:8600613-8603630 FORWARD LENGTH=384
Length = 383
Score = 164 bits (414), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 96/257 (37%), Positives = 147/257 (57%), Gaps = 13/257 (5%)
Query: 27 ALPDFRDVLSGAFKFVTKQDKKDGPSTSS--PHAAHLLSQVNHLREDLQLLSRSNQVAIV 84
LPD +++SGAFK V +Q K+D PS S+ PH L++QVN LR ++QLL + + IV
Sbjct: 61 GLPDVSNLVSGAFKMVFRQLKQDEPSKSASKPHDDVLVAQVNSLRHEIQLLGSNRPITIV 120
Query: 85 TVDGRPGPGAYGITAVVAGAIGYLYIRWKGWKLSDLMFVTKRGLSDACDVVGKQLEHVSE 144
+ G G YG+ +V G IGY Y+ WKGWKL D MF T+R LSDAC+ VG Q++
Sbjct: 121 SPSGSGGRN-YGLIIIV-GVIGYGYVWWKGWKLPDFMFATRRSLSDACNNVGNQIDGFYS 178
Query: 145 NVNAAKRHLAGRIDHVDCTLDECQEITESTRKEVTVIHEDISAFQEEMQSVHLVVRTLET 204
++ KR L+ ID + LD E+ + T +EV + + S ++++++V L +
Sbjct: 179 SLKGTKRELSSEIDMMGRRLDANTEVIQETIQEVAKLQDGTSFIKDDVKAVFDAFENLAS 238
Query: 205 KLGRLSYTQDRTARGIYDL---CEFTKRLDKSPKTDTRQVLSSTPLPAIELPERI--TRA 259
K+ R+ QD T RG+ L C+ +R+ +S K + S++ LPA+E ++
Sbjct: 239 KVCRIEGNQDITLRGVGALHAQCQENQRIQESNKA----LPSTSSLPALEAAPMAPSSKT 294
Query: 260 ASLPPSSEPEFSGPRSP 276
SLPP+S E P +P
Sbjct: 295 LSLPPASPDESQSPSTP 311
>AT1G24267.2 | chr1:8604451-8607241 REVERSE LENGTH=345
Length = 344
Score = 127 bits (318), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 95/282 (33%), Positives = 146/282 (51%), Gaps = 12/282 (4%)
Query: 27 ALPDFRDVLSGAFKFVTKQDKKDGP--STSSPHAAHLLSQVNHLREDLQLLSRSNQVAIV 84
+LPD +SGA K V +Q K++ P S S P L++QVN LR +L LLS + + IV
Sbjct: 26 SLPDVSSFVSGALKMVFRQLKQEEPAKSASKPRNDTLMAQVNSLRHELSLLSSNRPITIV 85
Query: 85 TVDGRPGPGAYGITAVVAGAIGYLYIRWKGWKLSDLMFVTKRGLSDACDVVGKQLEHVSE 144
T G G I + GY++ WKGWKL DLMF T+R LSDAC+ VG Q++
Sbjct: 86 TTAGSGGKKYGYIIIIGVIGYGYVW--WKGWKLPDLMFATRRSLSDACNSVGSQIDGFYT 143
Query: 145 NVNAAKRHLAGRIDHVDCTLDECQEITESTRKEVTVIHEDISAFQEEMQSVHLVVRTLET 204
+++ K+ L+ +ID + +LD EI + T +EV + +++++ V V L
Sbjct: 144 SLSGTKKELSSKIDGMGRSLDANTEIIQDTGREVMELQRGTENIKDDVKFVFDAVENLVR 203
Query: 205 KL-GRLSYTQDRTARGIYDLCEFTKRLDKSPKTDTRQVLSSTPLPAIELPERI--TRAAS 261
KL R+ QD T +G+ L R +K + + + S++ +PA+E +R S
Sbjct: 204 KLIYRIEGNQDITLKGVGAL-HAQVRENKRIQESNKALPSTSAVPALEAAPMTPSSRTLS 262
Query: 262 LPPSSEPEFSGPRSPVTEASKVVHSPT--TMSASGLSMLVET 301
LPP+S E P + + ++ P T S SGL + E
Sbjct: 263 LPPASPRESQSPST--SNGAQQSRGPLQHTQSMSGLKEISEN 302
>AT1G04960.2 | chr1:1408021-1410424 REVERSE LENGTH=335
Length = 334
Score = 110 bits (275), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 74/273 (27%), Positives = 129/273 (47%), Gaps = 24/273 (8%)
Query: 18 LLTSGEAKIALPDFRDVLSGAFKFVTKQDKKDGPSTSSPHAAHLLSQVNHLREDLQLLSR 77
+L G + +D+L+GA + K DG A L +Q+ L +++ L+
Sbjct: 42 VLRHGRLSDLIAQLQDLLNGAQGVESTPFKYDG--------ALLAAQIRQLANEIKELTM 93
Query: 78 SNQVAIVTVDGRP-GPGAYGITAVVAGAIGYLYIRWKGWKLSDLMFVTKRGLSDACDVVG 136
+N V I D G +Y + A GA+GY Y+ WKGW SD MFVTK+ ++DA V
Sbjct: 94 TNPVTIFNGDSNSSGYASYLVPAAAVGAMGYCYMWWKGWSFSDAMFVTKKNMADAVASVS 153
Query: 137 KQLEHVSENVNAAKRHLAGRIDHVDCTLDECQEITESTRKEVTVIHEDISAFQEEMQSVH 196
KQL+ +S+ + + ++HL+ ++ +D ++E E ++ +VT + IS + + ++
Sbjct: 154 KQLDDLSDTLASTRKHLSQKLATLDWKVEEQNETSKMILSDVTEMRSSISQIGFDFKQLN 213
Query: 197 LVVRTLETKLGRLSYTQDRTARGIYDLCEFTKRLDKSPKTDTRQVLSSTPLPAIELPERI 256
++ +E K+ L QD T G++ LC+ D + + V P+
Sbjct: 214 EMISGIEGKIESLESKQDVTLSGLWHLCQVAGVKDSTSTKVFQDVGERLPIDG------- 266
Query: 257 TRAASLPPSSEPEFSGPR--SPVTEASKVVHSP 287
PS+ SG R + E + V+H P
Sbjct: 267 ------KPSTNTSLSGLRFLTEGKEDANVIHKP 293
>AT1G27000.1 | chr1:9374068-9376422 FORWARD LENGTH=305
Length = 304
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 100/180 (55%), Gaps = 4/180 (2%)
Query: 49 DGPSTSSPHAAHLLSQVNHLREDLQLLSRSNQVAIVTVDGRPGPG--AYGITAVVAGAIG 106
+G S + + +QV L +++ L+ +Q I ++G G A + A GA+G
Sbjct: 50 EGSEGDSDVSDAIAAQVRRLAMEIRQLA--SQQHITVMNGVSGANLQALAVPAAALGALG 107
Query: 107 YLYIRWKGWKLSDLMFVTKRGLSDACDVVGKQLEHVSENVNAAKRHLAGRIDHVDCTLDE 166
Y Y+ WKG +DLM+VTK ++ A + K LE VSE + AAKRHL RI ++D +++
Sbjct: 108 YGYMWWKGLSFTDLMYVTKANMAAAVANLTKNLEQVSETLAAAKRHLTQRIQNLDDKVEK 167
Query: 167 CQEITESTRKEVTVIHEDISAFQEEMQSVHLVVRTLETKLGRLSYTQDRTARGIYDLCEF 226
++++ +V E+IS+ + +++S+H ++ L+ KL L Y QD T + +L +
Sbjct: 168 QIDLSKEINSQVISARENISSLEMDLESLHNLITGLDGKLDTLEYKQDVTNVFMLNLYNY 227
>AT2G02730.1 | chr2:765280-767336 REVERSE LENGTH=277
Length = 276
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 103/195 (52%), Gaps = 6/195 (3%)
Query: 33 DVLSGAFKFVTKQDKKDGPSTSSPHAAHLLSQVNHLREDLQLLSRSNQVAIVTVDGRPGP 92
D+L G + + K+ +K G A + +Q+ L +++ L+ S Q+ ++ +G G
Sbjct: 33 DIL-GELQALVKRFEKSGDHVDDDSDA-MTTQMQRLAMEVRQLASSRQITVM--NGAQGA 88
Query: 93 GA--YGITAVVAGAIGYLYIRWKGWKLSDLMFVTKRGLSDACDVVGKQLEHVSENVNAAK 150
+ + A GA+GY Y+ +KG SD+M VTKR + +A + K L+ VSE + AK
Sbjct: 89 DFTPFIVPAATLGALGYGYMWFKGISFSDIMCVTKRNMENAVSNLTKHLDTVSEAILNAK 148
Query: 151 RHLAGRIDHVDCTLDECQEITESTRKEVTVIHEDISAFQEEMQSVHLVVRTLETKLGRLS 210
+HL+ R+ VD LD +++ + + V + ED++ ++ ++H + + KL +
Sbjct: 149 KHLSQRLQKVDDKLDLQKDLLKGVQDNVGLALEDLANIGDDFDAMHSIFGGMGGKLDSIE 208
Query: 211 YTQDRTARGIYDLCE 225
Y Q+ G+ LC+
Sbjct: 209 YKQNIANMGLIYLCD 223
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.315 0.130 0.371
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,677,286
Number of extensions: 262333
Number of successful extensions: 1067
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 1062
Number of HSP's successfully gapped: 5
Length of query: 356
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 256
Effective length of database: 8,364,969
Effective search space: 2141432064
Effective search space used: 2141432064
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 112 (47.8 bits)