Os12g0641300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os12g0641300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 72.58 | 0.4 | 13 | -0.0353 | 2.11 | -0.804 | 1.02 | 0.755 | -0.526 | 5.89 | 20.2 | 1515 | -- | -- |
| 73.36 | 0.399 | 13 | -0.00726 | 2.1 | -1.02 | 1.18 | -- | -0.539 | 5.88 | 19.01 | 2840 | -- | -- |
| 74.97 | 0.403 | 13 | -0.0248 | 2.12 | -0.815 | -- | 0.753 | -0.528 | 5.83 | 20.29 | 1425 | -- | -- |
| 75.93 | 0.406 | 13 | -0.145 | 2.13 | -0.93 | -- | -- | -0.551 | 5.81 | 20.3 | 1396 | -- | -- |
| 288.79 | 0.791 | 13 | -0.0111 | -- | -0.818 | -- | 0.487 | -0.388 | -- | 22.11 | 459 | -- | -- |
| 90.29 | 0.445 | 13.1 | -0.533 | 2.09 | -- | 1.19 | -- | -0.745 | 5.91 | -- | -- | -- | -- |
| 93.71 | 0.453 | 13.1 | -0.524 | 2.1 | -- | -- | -- | -0.75 | 5.86 | -- | -- | -- | -- |
| 195.34 | 0.651 | 13 | 0.299 | -- | -1.3 | -- | -- | -0.362 | -- | 26.6 | 372 | -- | -- |
| 76.43 | 0.407 | 13 | -- | 2.12 | -0.955 | -- | -- | -0.534 | 5.81 | 20.2 | 1383 | -- | -- |
| 321.82 | 0.838 | 13.1 | -0.461 | -- | -- | -- | -- | -0.701 | -- | -- | -- | -- | -- |
| 100.96 | 0.47 | 13 | -- | 2.09 | -- | -- | -- | -0.692 | 5.87 | -- | -- | -- | -- |
| 188.41 | 0.639 | 13 | -- | -- | -1.46 | -- | -- | -0.306 | -- | 26.32 | 374 | -- | -- |
| 327.42 | 0.845 | 13.1 | -- | -- | -- | -- | -- | -0.65 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 68.13 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 3 | 68.39 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 7 |
| 4 | 68.41 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 10 |
| 6 | 68.46 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 5 |
| 8 | 68.46 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 7 |
| 11 | 68.47 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 14 | 68.51 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 10 |
| 17 | 68.55 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 5 |
| 86 | 69.11 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 2 |
| 91 | 69.16 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 2 |
| 111 | 69.24 | temperature | 20 | 1440 | < th | dose independent | sin | 10 | NA |
| 114 | 69.25 | temperature | 20 | 1440 | > th | dose independent | sin | 10 | NA |
| 285 | 70.83 | temperature | 20 | 1440 | < th | dose dependent | rect. | 2 | 2 |
| 335 | 71.31 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 386 | 71.56 | temperature | 15 | 1440 | > th | dose dependent | rect. | 2 | 1 |
| 388 | 71.59 | humidity | 90 | 14400 | > th | dose independent | rect. | 23 | 1 |
| 570 | 72.46 | humidity | 90 | 14400 | > th | dose dependent | rect. | 23 | 2 |
| 603 | 72.54 | humidity | 90 | 14400 | > th | dose dependent | rect. | 23 | 17 |
| 696 | 72.80 | radiation | 10 | 10 | < th | dose dependent | sin | 23 | NA |
| 701 | 72.81 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 721 | 72.86 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 723 | 72.86 | temperature | 15 | 1440 | > th | dose dependent | rect. | 5 | 1 |
| 738 | 72.89 | humidity | 90 | 14400 | > th | dose dependent | rect. | 2 | 13 |
| 744 | 72.92 | temperature | 25 | 1440 | < th | dose dependent | rect. | 5 | 1 |
| 750 | 72.93 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 23 |
| 756 | 72.95 | radiation | 20 | 90 | < th | dose dependent | sin | 0 | NA |
| 766 | 72.98 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 23 |
| 793 | 73.07 | humidity | 90 | 14400 | < th | dose independent | rect. | 23 | 2 |
| 801 | 73.09 | humidity | 90 | 14400 | > th | dose dependent | sin | 5 | NA |
| 868 | 73.22 | temperature | 25 | 1440 | < th | dose dependent | sin | 10 | NA |
| 907 | 73.32 | temperature | 20 | 1440 | > th | dose independent | rect. | 2 | 23 |
| 921 | 73.34 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 21 | 17 |