Os12g0641100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Sodium/hydrogen exchanger family protein.
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Os12g0641100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Sodium/hydrogen exchanger family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = precipitation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 24.96 | 0.235 | 11.6 | 0.126 | 0.314 | 0.117 | -0.0206 | 1.37 | 0.439 | 2.48 | 0.1366 | 4325 | -- | -- |
| 25.21 | 0.234 | 11.6 | 0.121 | 0.325 | 0.419 | 0.0724 | -- | 0.46 | 2.54 | 0.4445 | 19600 | -- | -- |
| 24.96 | 0.233 | 11.6 | 0.128 | 0.314 | 0.115 | -- | 1.37 | 0.439 | 2.5 | 0.1447 | 4325 | -- | -- |
| 25.12 | 0.233 | 11.6 | 0.0679 | 0.328 | 0.429 | -- | -- | 0.471 | 2.55 | 0.4576 | 19598 | -- | -- |
| 30.35 | 0.257 | 11.6 | 0.224 | -- | -0.13 | -- | 2.31 | 0.459 | -- | 0.3904 | 2870 | -- | -- |
| 28.94 | 0.252 | 11.6 | 0.232 | 0.322 | -- | 0.0518 | -- | 0.417 | 2.56 | -- | -- | -- | -- |
| 28.95 | 0.252 | 11.6 | 0.231 | 0.322 | -- | -- | -- | 0.417 | 2.52 | -- | -- | -- | -- |
| 31.34 | 0.261 | 11.6 | 0.0728 | -- | 0.417 | -- | -- | 0.47 | -- | 0.472 | 19565 | -- | -- |
| 25.21 | 0.234 | 11.6 | -- | 0.328 | 0.451 | -- | -- | 0.465 | 2.55 | 0.4752 | 19600 | -- | -- |
| 35.05 | 0.277 | 11.6 | 0.244 | -- | -- | -- | -- | 0.425 | -- | -- | -- | -- | -- |
| 30.35 | 0.258 | 11.6 | -- | 0.327 | -- | -- | -- | 0.392 | 2.53 | -- | -- | -- | -- |
| 31.45 | 0.261 | 11.6 | -- | -- | 0.449 | -- | -- | 0.466 | -- | 0.4867 | 19571 | -- | -- |
| 36.62 | 0.282 | 11.6 | -- | -- | -- | -- | -- | 0.398 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 24.83 | precipitation | 0.1 | 4320 | > th | dose dependent | sin | 2 | NA |
| 2 | 24.83 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 3 | 14 |
| 4 | 24.86 | wind | 1.0 | 4320 | > th | dose independent | rect. | 17 | 2 |
| 5 | 24.88 | wind | 3.0 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 6 | 24.90 | wind | 1.0 | 4320 | < th | dose independent | rect. | 18 | 1 |
| 8 | 24.92 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 12 | 5 |
| 9 | 24.92 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 2 | 20 |
| 16 | 24.93 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 21 | 23 |
| 22 | 24.95 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 12 | 20 |
| 33 | 24.96 | precipitation | 0.1 | 4320 | > th | dose dependent | no | NA | NA |
| 34 | 24.96 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 12 | 18 |
| 43 | 24.96 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 7 | 23 |
| 60 | 24.98 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 15 | 23 |
| 66 | 25.00 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 3 | 11 |
| 79 | 25.02 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 3 | 18 |
| 85 | 25.02 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 19 | 23 |
| 87 | 25.03 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 3 | 18 |
| 89 | 25.03 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 3 | 18 |
| 98 | 25.06 | precipitation | 0.1 | 4320 | > th | dose independent | sin | 1 | NA |
| 110 | 25.07 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 7 | 10 |
| 115 | 25.08 | temperature | 30.0 | 270 | < th | dose independent | rect. | 13 | 16 |
| 119 | 25.09 | precipitation | 0.1 | 4320 | < th | dose independent | sin | 1 | NA |
| 123 | 25.09 | precipitation | 0.1 | 4320 | < th | dose dependent | sin | 1 | NA |
| 139 | 25.11 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 3 | 14 |
| 151 | 25.13 | wind | 3.0 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 153 | 25.13 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 21 | 23 |
| 176 | 25.15 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 3 | 14 |
| 182 | 25.15 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 3 | 14 |
| 225 | 25.19 | precipitation | 0.1 | 4320 | > th | dose dependent | sin | 13 | NA |
| 248 | 25.22 | wind | 3.0 | 14400 | < th | dose independent | rect. | 21 | 4 |
| 258 | 25.23 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 12 | 20 |
| 259 | 25.23 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 12 | 20 |
| 268 | 25.23 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 12 | 20 |
| 303 | 25.26 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 12 | 5 |
| 317 | 25.26 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 7 | 23 |
| 319 | 25.26 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 16 | 1 |
| 320 | 25.26 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 13 | 7 |
| 328 | 25.26 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 7 | 23 |
| 330 | 25.27 | precipitation | 0.1 | 4320 | > th | dose independent | no | NA | NA |
| 331 | 25.27 | precipitation | 0.1 | 4320 | < th | dose independent | no | NA | NA |
| 332 | 25.27 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 12 | 8 |
| 338 | 25.27 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 7 | 23 |
| 342 | 25.27 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 15 | 23 |
| 343 | 25.27 | precipitation | 0.1 | 4320 | < th | dose dependent | no | NA | NA |
| 345 | 25.27 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 12 | 8 |
| 351 | 25.27 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 15 | 23 |
| 353 | 25.28 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 12 | 5 |
| 354 | 25.28 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 12 | 8 |
| 363 | 25.28 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 15 | 23 |
| 370 | 25.28 | wind | 1.0 | 4320 | < th | dose dependent | rect. | 18 | 1 |
| 371 | 25.28 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 12 | 5 |
| 472 | 25.34 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 7 | 14 |
| 481 | 25.35 | wind | 3.0 | 14400 | > th | dose independent | rect. | 20 | 5 |
| 486 | 25.35 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 3 | 11 |
| 487 | 25.35 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 7 | 13 |
| 488 | 25.35 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 7 | 13 |
| 507 | 25.35 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 7 | 13 |
| 551 | 25.37 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 18 | 16 |
| 569 | 25.38 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 18 | 14 |
| 581 | 25.39 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 3 | 11 |
| 595 | 25.39 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 7 | 7 |
| 597 | 25.39 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 3 | 11 |
| 628 | 25.40 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 7 | 1 |
| 629 | 25.40 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 11 | 3 |
| 631 | 25.40 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 18 | 12 |
| 661 | 25.41 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 19 | 23 |
| 662 | 25.41 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 19 | 23 |
| 679 | 25.41 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 19 | 23 |
| 703 | 25.43 | wind | 3.0 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 718 | 25.44 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 764 | 25.46 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 796 | 25.48 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 3 | 3 |
| 813 | 25.50 | wind | 3.0 | 14400 | > th | dose independent | rect. | 24 | 1 |
| 815 | 25.50 | wind | 1.0 | 1440 | > th | dose independent | rect. | 12 | 7 |
| 817 | 25.50 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 7 | 10 |
| 867 | 25.52 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 19 | 1 |
| 886 | 25.53 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 7 | 10 |
| 894 | 25.53 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 7 | 10 |
| 898 | 25.54 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 19 | 1 |
| 899 | 25.54 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 4 | 2 |
| 914 | 25.55 | temperature | 30.0 | 270 | < th | dose independent | rect. | 10 | 9 |
| 928 | 25.55 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 18 | 4 |
| 955 | 25.57 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 19 | 1 |
| 956 | 25.57 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 3 |
| 957 | 25.57 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 16 | 4 |
| 973 | 25.57 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 19 | 1 |
| 975 | 25.57 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 3 |
| 978 | 25.57 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 15 | 5 |