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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0640700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : N/apple PAN domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.57 (0.0384) R2 : 0.225
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.69 (0.154) R2dE : 0.223 R2E : 0.225
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0197 (0.0829) R2dN8 : 9.66e-05 R2N8 : 0.00247
σ : 0.716
deviance : 236.52
__
_____
C
peak time of C : --
E
wheather : radiation
threshold : 3.206
memory length : 4861
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
211.08 0.683 4.7 -0.134 0.937 2.42 -0.215 5.74 -0.186 5.02 0.1759 4367 -- --
226.36 0.701 4.6 0.498 0.666 1.64 -0.503 -- -0.0635 4.61 2.652 7596 -- --
210.91 0.676 4.7 -0.119 0.953 2.4 -- 5.61 -0.185 4.88 0.17 4357 -- --
221.82 0.694 4.54 0.565 0.649 1.55 -- -- 0.0577 5.47 2.58 7555 -- --
222.02 0.694 4.64 0.222 -- 2.79 -- 5.32 -0.0327 -- 0.17 6248 -- --
250.35 0.742 4.61 0.269 0.944 -- -0.0495 -- -0.239 4.59 -- -- -- --
250.35 0.741 4.61 0.27 0.944 -- -- -- -0.239 4.58 -- -- -- --
227.73 0.703 4.55 0.616 -- 1.8 -- -- 0.0598 -- 2.612 4893 -- --
229.1 0.705 4.56 -- 0.694 1.34 -- -- -0.0109 5.33 3.279 7551 -- --
297.79 0.806 4.61 0.306 -- -- -- -- -0.214 -- -- -- -- --
252.27 0.743 4.61 -- 0.949 -- -- -- -0.269 4.57 -- -- -- --
236.52 0.716 4.57 -- -- 1.69 -- -- -0.0197 -- 3.206 4861 -- --
300.26 0.809 4.62 -- -- -- -- -- -0.248 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 213.79 radiation 1.0 14400 < th dose dependent rect. 12 14
5 213.81 radiation 1.0 14400 < th dose dependent rect. 9 17
9 213.83 radiation 1.0 14400 < th dose dependent rect. 12 6
22 213.86 radiation 1.0 14400 < th dose dependent rect. 12 9
30 213.87 radiation 1.0 14400 < th dose dependent rect. 9 12
36 213.89 radiation 1.0 14400 < th dose dependent rect. 9 10
65 213.96 radiation 1.0 14400 < th dose dependent sin 19 NA
76 214.01 radiation 1.0 14400 > th dose independent rect. 8 11
102 214.10 radiation 1.0 14400 < th dose independent rect. 8 17
109 214.11 radiation 1.0 14400 < th dose independent rect. 8 13
110 214.11 radiation 1.0 14400 < th dose independent rect. 8 15
118 214.13 radiation 1.0 14400 > th dose independent rect. 12 7
173 214.26 radiation 1.0 14400 < th dose independent rect. 12 13
182 214.27 radiation 1.0 14400 < th dose independent rect. 12 9
183 214.27 radiation 1.0 14400 < th dose independent rect. 12 11
223 214.33 radiation 1.0 14400 > th dose independent sin 19 NA
245 214.43 radiation 1.0 14400 < th dose independent sin 19 NA
393 215.15 radiation 40.0 14400 < th dose dependent rect. 18 9
413 215.29 radiation 1.0 14400 < th dose dependent rect. 12 22
418 215.31 radiation 1.0 14400 < th dose dependent rect. 4 22
422 215.32 radiation 1.0 14400 < th dose dependent no NA NA
426 215.32 radiation 1.0 14400 < th dose dependent rect. 22 22
429 215.32 radiation 1.0 14400 < th dose dependent rect. 20 23
434 215.33 radiation 1.0 14400 < th dose dependent rect. 23 20
457 215.35 radiation 1.0 14400 < th dose dependent rect. 4 16
473 215.36 radiation 40.0 43200 < th dose dependent rect. 18 11
512 215.49 humidity 80.0 43200 < th dose independent rect. 15 2
539 215.60 humidity 80.0 43200 > th dose independent rect. 16 1
560 215.70 humidity 90.0 43200 > th dose independent rect. 19 5
575 215.80 humidity 80.0 43200 < th dose independent rect. 12 6
579 215.81 humidity 90.0 43200 > th dose independent rect. 22 2
596 215.83 radiation 40.0 43200 < th dose dependent rect. 18 5
608 215.87 radiation 40.0 43200 < th dose dependent rect. 18 3
646 215.95 humidity 80.0 43200 > th dose independent rect. 13 5
696 216.03 humidity 90.0 43200 > th dose independent rect. 20 1
702 216.06 humidity 90.0 43200 < th dose independent rect. 19 5
734 216.18 humidity 90.0 43200 < th dose independent rect. 19 2
745 216.20 precipitation 0.1 43200 > th dose independent rect. 16 8
746 216.20 precipitation 0.1 43200 < th dose independent rect. 16 8
747 216.20 precipitation 0.1 43200 < th dose dependent rect. 16 8
861 216.58 precipitation 0.1 43200 > th dose independent rect. 16 2
877 216.62 precipitation 0.1 43200 < th dose independent rect. 16 2
882 216.62 precipitation 0.1 43200 < th dose dependent rect. 16 2
933 216.71 radiation 1.0 14400 < th dose independent no NA NA
935 216.71 precipitation 0.1 43200 > th dose independent rect. 13 11
949 216.71 radiation 1.0 14400 < th dose independent rect. 24 21
958 216.71 radiation 1.0 14400 < th dose independent rect. 12 23
996 216.73 precipitation 0.1 43200 < th dose independent rect. 13 11