Os12g0639700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Glycosyl transferase, family 14 protein.
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Os12g0639700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Glycosyl transferase, family 14 protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 23.66 | 0.229 | 10.6 | 0.802 | 0.654 | -0.646 | -0.0919 | -0.781 | 0.195 | 20.8 | 30.1 | 93 | -- | -- |
| 24.41 | 0.232 | 10.6 | 0.682 | 0.693 | -0.747 | -0.185 | -- | 0.178 | 20.8 | 45.46 | 90 | -- | -- |
| 23.68 | 0.227 | 10.6 | 0.81 | 0.653 | -0.65 | -- | -0.81 | 0.195 | 20.9 | 30.04 | 95 | -- | -- |
| 24.53 | 0.232 | 10.6 | 0.687 | 0.693 | -0.748 | -- | -- | 0.178 | 20.8 | 52.21 | 78 | -- | -- |
| 38.12 | 0.288 | 10.5 | 0.727 | -- | -1.04 | -- | -0.864 | 0.159 | -- | 55.76 | 546 | -- | -- |
| 29.83 | 0.256 | 10.5 | 0.828 | 0.697 | -- | -0.17 | -- | 0.284 | 19.6 | -- | -- | -- | -- |
| 29.92 | 0.256 | 10.5 | 0.832 | 0.697 | -- | -- | -- | 0.283 | 19.6 | -- | -- | -- | -- |
| 38.66 | 0.29 | 10.6 | 0.58 | -- | -1.06 | -- | -- | 0.119 | -- | 63.56 | 547 | -- | -- |
| 35.59 | 0.278 | 10.6 | -- | 0.655 | -1.07 | -- | -- | 0.064 | 21.4 | 58.93 | 79 | -- | -- |
| 56.02 | 0.35 | 10.5 | 0.822 | -- | -- | -- | -- | 0.273 | -- | -- | -- | -- | -- |
| 48.15 | 0.325 | 10.6 | -- | 0.69 | -- | -- | -- | 0.191 | 19.7 | -- | -- | -- | -- |
| 46.72 | 0.318 | 10.6 | -- | -- | -1.27 | -- | -- | 0.0283 | -- | 52.08 | 582 | -- | -- |
| 73.86 | 0.401 | 10.6 | -- | -- | -- | -- | -- | 0.182 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 20.63 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 17 | 21.59 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 21 |
| 27 | 21.92 | wind | 1 | 14400 | < th | dose independent | rect. | 10 | 2 |
| 29 | 21.94 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 19 |
| 42 | 22.13 | wind | 1 | 14400 | > th | dose independent | rect. | 10 | 2 |
| 64 | 22.31 | wind | 1 | 14400 | < th | dose dependent | rect. | 10 | 2 |
| 79 | 22.57 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 21 |
| 88 | 22.64 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 15 |
| 97 | 22.69 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 17 |
| 136 | 22.95 | temperature | 20 | 270 | > th | dose dependent | sin | 6 | NA |
| 176 | 23.18 | temperature | 25 | 270 | < th | dose independent | rect. | 23 | 21 |
| 186 | 23.22 | temperature | 10 | 270 | > th | dose dependent | sin | 6 | NA |
| 187 | 23.22 | temperature | 30 | 90 | < th | dose dependent | sin | 0 | NA |
| 192 | 23.23 | temperature | 30 | 10 | < th | dose dependent | rect. | 6 | 15 |
| 199 | 23.25 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 18 |
| 204 | 23.27 | temperature | 25 | 270 | < th | dose independent | rect. | 2 | 18 |
| 208 | 23.29 | temperature | 30 | 10 | < th | dose dependent | sin | 23 | NA |
| 221 | 23.32 | temperature | 30 | 270 | < th | dose dependent | sin | 5 | NA |
| 230 | 23.34 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 20 |
| 231 | 23.34 | temperature | 25 | 270 | > th | dose independent | rect. | 18 | 21 |
| 259 | 23.42 | temperature | 25 | 4320 | > th | dose independent | rect. | 23 | 1 |
| 280 | 23.47 | temperature | 20 | 90 | > th | dose dependent | sin | 2 | NA |
| 288 | 23.48 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 306 | 23.53 | temperature | 20 | 270 | > th | dose dependent | rect. | 6 | 8 |
| 334 | 23.57 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 360 | 23.62 | temperature | 25 | 4320 | > th | dose independent | rect. | 21 | 4 |
| 361 | 23.62 | temperature | 25 | 90 | < th | dose independent | rect. | 5 | 16 |
| 378 | 23.64 | temperature | 25 | 4320 | < th | dose independent | rect. | 21 | 5 |
| 379 | 23.64 | temperature | 20 | 10 | > th | dose dependent | sin | 0 | NA |
| 383 | 23.65 | temperature | 25 | 270 | > th | dose independent | rect. | 23 | 15 |
| 399 | 23.67 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 420 | 23.71 | temperature | 25 | 4320 | < th | dose independent | rect. | 22 | 3 |
| 435 | 23.72 | temperature | 15 | 270 | > th | dose dependent | rect. | 8 | 18 |
| 438 | 23.72 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 439 | 23.73 | wind | 9 | 14400 | > th | dose independent | rect. | 15 | 2 |
| 465 | 23.76 | temperature | 25 | 4320 | < th | dose independent | rect. | 23 | 1 |
| 467 | 23.76 | temperature | 20 | 10 | > th | dose dependent | no | NA | NA |
| 511 | 23.81 | temperature | 20 | 4320 | > th | dose dependent | rect. | 23 | 1 |
| 523 | 23.83 | radiation | 10 | 4320 | > th | dose independent | rect. | 15 | 2 |
| 550 | 23.86 | temperature | 25 | 270 | > th | dose independent | rect. | 7 | 7 |
| 574 | 23.88 | radiation | 10 | 4320 | < th | dose independent | rect. | 15 | 2 |
| 581 | 23.88 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 590 | 23.89 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 597 | 23.90 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 628 | 23.93 | temperature | 10 | 90 | > th | dose dependent | no | NA | NA |
| 629 | 23.93 | temperature | 20 | 1440 | > th | dose dependent | rect. | 23 | 9 |
| 640 | 23.95 | radiation | 30 | 4320 | > th | dose independent | rect. | 12 | 1 |
| 641 | 23.95 | radiation | 30 | 4320 | < th | dose independent | rect. | 12 | 1 |
| 643 | 23.95 | temperature | 25 | 10 | < th | dose independent | rect. | 6 | 15 |
| 662 | 23.96 | radiation | 20 | 4320 | > th | dose dependent | rect. | 12 | 1 |
| 690 | 23.97 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 695 | 23.98 | wind | 3 | 43200 | < th | dose dependent | rect. | 23 | 1 |
| 716 | 24.00 | radiation | 10 | 4320 | > th | dose independent | rect. | 15 | 16 |
| 756 | 24.03 | temperature | 25 | 10 | > th | dose independent | rect. | 8 | 8 |
| 782 | 24.03 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 13 |
| 795 | 24.04 | radiation | 1 | 4320 | > th | dose dependent | rect. | 12 | 1 |
| 819 | 24.06 | temperature | 25 | 270 | < th | dose independent | sin | 4 | NA |
| 827 | 24.06 | radiation | 30 | 4320 | < th | dose dependent | rect. | 15 | 1 |
| 842 | 24.07 | radiation | 1 | 4320 | > th | dose dependent | rect. | 15 | 1 |
| 850 | 24.08 | temperature | 25 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 873 | 24.08 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 874 | 24.09 | temperature | 25 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 875 | 24.09 | wind | 9 | 14400 | < th | dose independent | rect. | 15 | 2 |
| 918 | 24.11 | radiation | 30 | 4320 | < th | dose dependent | rect. | 11 | 20 |
| 924 | 24.12 | temperature | 25 | 4320 | < th | dose independent | sin | 12 | NA |
| 926 | 24.12 | radiation | 20 | 4320 | > th | dose independent | sin | 15 | NA |
| 946 | 24.13 | radiation | 20 | 4320 | < th | dose independent | rect. | 14 | 7 |
| 950 | 24.13 | temperature | 25 | 1440 | < th | dose independent | rect. | 23 | 13 |
| 953 | 24.13 | radiation | 20 | 4320 | < th | dose independent | rect. | 14 | 17 |
| 962 | 24.14 | radiation | 20 | 4320 | < th | dose independent | rect. | 14 | 5 |
| 978 | 24.14 | radiation | 10 | 4320 | > th | dose dependent | rect. | 15 | 16 |