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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0639200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to ATPase 3.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.46 (0.0926) R2 : 0.553
β1 : -1.11 (0.706) R2dD : 0.0452 R2D : -0.527
β2 : -- (--) R2dC : -- R2C : --
β3 : 3.37 (0.439) R2dE : 0.886 R2E : -0.456
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -24.6 (3.73) R2dD*E : 1.24 R2D*E : -0.302
γ1 : -0.133 (0.1) R2dN8 : 0.0024 R2N8 : -0.152
σ : 0.854
deviance : 336.03
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 29.81
memory length : 1401
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
314.54 0.833 6.48 -1.29 0.499 3.42 1.54 -25.8 -0.143 3.3 29.86 1408 -- --
344.36 0.864 6.07 2.26 0.488 1.4 0.46 -- -0.743 4.85 -52.86 24325 -- --
321.12 0.835 6.46 -1.24 0.518 3.41 -- -25.4 -0.134 4.2 29.89 1402 -- --
344.79 0.865 6.05 2.44 0.503 1.24 -- -- -0.675 3.78 -63.86 24356 -- --
336.03 0.854 6.46 -1.11 -- 3.37 -- -24.6 -0.133 -- 29.81 1401 -- --
361.88 0.892 5.95 3.59 0.517 -- 1.53 -- -0.2 2.88 -- -- -- --
369.22 0.9 5.95 3.55 0.543 -- -- -- -0.21 3.64 -- -- -- --
357.5 0.881 6.07 2.43 -- 1.28 -- -- -0.768 -- 18.3 22812 -- --
400.23 0.932 6.23 -- 0.505 2.8 -- -- -1.44 3.91 -85.41 47520 -- --
385.62 0.918 5.95 3.57 -- -- -- -- -0.196 -- -- -- -- --
701.69 1.24 6.04 -- 0.613 -- -- -- -0.606 3.59 -- -- -- --
414.19 0.948 6.23 -- -- 2.82 -- -- -1.44 -- -78.47 47520 -- --
722.64 1.25 6.04 -- -- -- -- -- -0.593 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 301.43 wind 9 43200 > th dose dependent rect. 13 1
2 301.56 radiation 20 43200 > th dose dependent rect. 15 2
16 301.59 radiation 40 43200 < th dose independent rect. 10 1
18 302.20 wind 1 43200 < th dose dependent rect. 23 4
19 302.23 radiation 20 43200 < th dose independent rect. 15 3
20 302.23 radiation 20 43200 < th dose independent rect. 15 5
22 302.23 radiation 20 43200 < th dose independent rect. 15 8
24 302.23 radiation 20 43200 < th dose independent rect. 15 11
34 302.97 radiation 20 43200 > th dose independent rect. 15 3
67 304.20 radiation 40 43200 < th dose independent rect. 15 20
118 305.31 radiation 40 43200 > th dose independent rect. 10 1
120 305.46 radiation 40 43200 < th dose independent rect. 14 4
121 305.46 radiation 40 43200 < th dose independent rect. 14 7
122 305.46 radiation 40 43200 < th dose independent rect. 14 10
128 305.47 radiation 40 43200 < th dose independent rect. 14 12
129 305.47 radiation 40 43200 < th dose independent rect. 14 17
130 305.48 radiation 40 43200 < th dose independent rect. 14 14
135 305.71 humidity 60 43200 > th dose independent rect. 10 2
138 305.83 radiation 40 43200 < th dose independent sin 14 NA
158 306.13 radiation 30 43200 > th dose dependent rect. 10 1
162 306.35 radiation 40 43200 < th dose independent rect. 6 5
166 306.35 radiation 40 43200 < th dose independent rect. 1 10
167 306.35 radiation 40 43200 < th dose independent rect. 19 16
170 306.36 radiation 40 43200 < th dose independent rect. 22 13
196 306.67 radiation 40 43200 < th dose independent sin 11 NA
217 306.86 wind 9 43200 > th dose independent rect. 13 1
224 307.04 wind 9 43200 < th dose independent rect. 13 1
242 307.09 wind 1 43200 < th dose dependent rect. 20 8
250 307.47 radiation 40 43200 < th dose independent rect. 10 22
255 307.59 wind 1 43200 < th dose dependent rect. 18 10
283 307.68 radiation 20 43200 < th dose independent sin 13 NA
338 307.92 radiation 10 43200 < th dose independent rect. 17 16
341 308.01 radiation 40 43200 < th dose independent rect. 10 8
342 308.01 radiation 40 43200 < th dose independent rect. 10 11
343 308.01 radiation 40 43200 < th dose independent rect. 10 13
406 308.37 wind 7 14400 > th dose dependent sin 7 NA
409 308.41 wind 9 14400 < th dose independent sin 7 NA
426 308.73 radiation 40 43200 < th dose independent rect. 5 16
427 308.73 radiation 40 43200 < th dose independent rect. 1 17
428 308.73 radiation 40 43200 < th dose independent rect. 5 18
431 308.73 radiation 40 43200 < th dose independent rect. 1 20
432 308.73 radiation 40 43200 < th dose independent rect. 3 21
433 308.73 radiation 40 43200 < th dose independent rect. 1 22
435 308.74 radiation 40 43200 < th dose independent no NA NA
436 308.74 radiation 40 43200 < th dose independent rect. 7 10
600 309.11 radiation 20 43200 > th dose dependent sin 14 NA
673 309.39 wind 9 14400 > th dose independent sin 7 NA
719 309.62 wind 1 43200 < th dose dependent sin 14 NA
736 309.71 wind 1 43200 < th dose dependent rect. 8 1
743 309.74 radiation 10 43200 < th dose independent rect. 1 7
744 309.75 radiation 10 43200 < th dose independent rect. 4 4
747 309.75 radiation 10 43200 < th dose independent rect. 22 10
748 309.75 radiation 10 43200 < th dose independent rect. 20 12
775 309.84 humidity 60 43200 < th dose independent rect. 11 1
784 309.85 radiation 10 43200 < th dose independent rect. 6 1
789 309.93 radiation 30 43200 > th dose dependent rect. 15 21
811 310.05 humidity 60 43200 > th dose independent rect. 18 18
812 310.09 humidity 60 43200 > th dose independent rect. 20 16
822 310.16 humidity 60 43200 > th dose independent rect. 24 12
825 310.16 radiation 40 43200 < th dose dependent rect. 15 1
833 310.23 radiation 30 43200 > th dose dependent rect. 7 5
848 310.24 radiation 10 43200 < th dose dependent rect. 6 1