Os12g0639000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os12g0639000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 142.23 | 0.56 | 2.98 | 0.223 | 0.125 | 10.3 | -0.128 | 21.8 | -0.00746 | 13.8 | 1015 | 1556 | -- | -- |
| 148.4 | 0.567 | 2.89 | 0.187 | 0.108 | 0.522 | 0.156 | -- | 0.0689 | 11.1 | 1013 | 4907 | -- | -- |
| 142.28 | 0.556 | 2.98 | 0.219 | 0.125 | 10.3 | -- | 21.8 | -0.00807 | 13.7 | 1015 | 1553 | -- | -- |
| 148.24 | 0.567 | 2.89 | 0.214 | 0.127 | 0.518 | -- | -- | 0.0598 | 12.7 | 1013 | 4960 | -- | -- |
| 143.22 | 0.557 | 2.98 | 0.22 | -- | 10.4 | -- | 22 | -0.00995 | -- | 1016 | 1559 | -- | -- |
| 155.19 | 0.584 | 2.9 | 0.105 | 0.139 | -- | 0.0515 | -- | -0.0144 | 13 | -- | -- | -- | -- |
| 155.2 | 0.583 | 2.9 | 0.107 | 0.14 | -- | -- | -- | -0.014 | 13.1 | -- | -- | -- | -- |
| 149.35 | 0.569 | 2.89 | 0.216 | -- | 0.535 | -- | -- | 0.0671 | -- | 1013 | 4979 | -- | -- |
| 149.35 | 0.569 | 2.89 | -- | 0.133 | 0.493 | -- | -- | 0.0401 | 12.9 | 1013 | 4896 | -- | -- |
| 156.41 | 0.584 | 2.9 | 0.102 | -- | -- | -- | -- | -0.0168 | -- | -- | -- | -- | -- |
| 155.5 | 0.583 | 2.91 | -- | 0.138 | -- | -- | -- | -0.0259 | 13 | -- | -- | -- | -- |
| 150.42 | 0.571 | 2.89 | -- | -- | 0.502 | -- | -- | 0.0351 | -- | 1014 | 4894 | -- | -- |
| 156.68 | 0.584 | 2.91 | -- | -- | -- | -- | -- | -0.028 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 134.67 | wind | 9 | 90 | > th | dose independent | rect. | 13 | 2 |
| 3 | 134.67 | wind | 9 | 90 | > th | dose dependent | rect. | 13 | 2 |
| 5 | 134.68 | wind | 9 | 10 | > th | dose independent | rect. | 13 | 1 |
| 17 | 134.68 | wind | 9 | 10 | > th | dose dependent | rect. | 13 | 1 |
| 36 | 138.28 | temperature | 25 | 90 | < th | dose dependent | rect. | 14 | 1 |
| 51 | 139.52 | temperature | 25 | 90 | < th | dose independent | rect. | 14 | 1 |
| 59 | 140.61 | radiation | 1 | 90 | < th | dose independent | rect. | 14 | 1 |
| 60 | 140.61 | radiation | 1 | 90 | < th | dose dependent | rect. | 14 | 1 |
| 64 | 141.12 | radiation | 30 | 10 | > th | dose independent | rect. | 13 | 1 |
| 66 | 141.90 | atmosphere | 1015 | 1440 | > th | dose dependent | sin | 22 | NA |
| 68 | 141.97 | atmosphere | 1015 | 1440 | > th | dose dependent | rect. | 10 | 12 |
| 79 | 142.02 | atmosphere | 1015 | 1440 | > th | dose independent | sin | 4 | NA |
| 80 | 142.07 | atmosphere | 1015 | 1440 | > th | dose dependent | sin | 4 | NA |
| 95 | 142.19 | atmosphere | 1015 | 1440 | > th | dose independent | rect. | 10 | 3 |
| 102 | 142.20 | atmosphere | 1015 | 1440 | < th | dose independent | rect. | 10 | 3 |
| 107 | 142.23 | atmosphere | 1015 | 1440 | < th | dose independent | rect. | 4 | 9 |
| 110 | 142.25 | atmosphere | 1015 | 1440 | < th | dose independent | rect. | 7 | 6 |
| 111 | 142.26 | atmosphere | 1015 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 115 | 142.27 | atmosphere | 1015 | 1440 | > th | dose dependent | rect. | 24 | 14 |
| 119 | 142.29 | atmosphere | 1015 | 1440 | > th | dose dependent | rect. | 10 | 4 |
| 134 | 142.30 | atmosphere | 1015 | 1440 | > th | dose independent | sin | 0 | NA |
| 198 | 142.32 | atmosphere | 1015 | 1440 | > th | dose independent | rect. | 24 | 13 |
| 199 | 142.32 | atmosphere | 1015 | 1440 | < th | dose independent | rect. | 24 | 13 |
| 207 | 142.34 | atmosphere | 1015 | 1440 | > th | dose independent | rect. | 10 | 11 |
| 221 | 142.35 | atmosphere | 1015 | 1440 | < th | dose independent | sin | 4 | NA |
| 251 | 142.47 | atmosphere | 1015 | 1440 | < th | dose independent | rect. | 23 | 15 |
| 352 | 142.77 | atmosphere | 1015 | 1440 | < th | dose independent | rect. | 23 | 21 |
| 360 | 142.86 | atmosphere | 1015 | 1440 | < th | dose independent | rect. | 23 | 17 |
| 370 | 142.98 | atmosphere | 1015 | 1440 | < th | dose independent | rect. | 10 | 10 |
| 371 | 142.99 | atmosphere | 1015 | 1440 | < th | dose independent | rect. | 2 | 18 |
| 375 | 143.01 | atmosphere | 1015 | 1440 | < th | dose independent | rect. | 7 | 13 |
| 376 | 143.01 | atmosphere | 1015 | 1440 | < th | dose independent | rect. | 4 | 16 |
| 465 | 143.30 | radiation | 20 | 10 | > th | dose dependent | rect. | 13 | 1 |
| 470 | 143.39 | atmosphere | 1010 | 270 | > th | dose dependent | rect. | 24 | 6 |
| 473 | 143.44 | temperature | 20 | 10 | < th | dose dependent | rect. | 12 | 5 |
| 535 | 143.62 | atmosphere | 1010 | 270 | > th | dose independent | rect. | 24 | 6 |
| 536 | 143.63 | atmosphere | 1010 | 270 | > th | dose dependent | rect. | 6 | 1 |
| 545 | 143.64 | radiation | 40 | 30 | > th | dose dependent | rect. | 13 | 1 |
| 582 | 143.71 | atmosphere | 1010 | 90 | > th | dose dependent | rect. | 24 | 9 |
| 583 | 143.72 | atmosphere | 1010 | 270 | > th | dose independent | rect. | 5 | 1 |
| 665 | 143.97 | atmosphere | 1010 | 90 | > th | dose dependent | rect. | 8 | 1 |
| 679 | 144.07 | temperature | 25 | 270 | < th | dose dependent | rect. | 12 | 1 |
| 682 | 144.10 | humidity | 80 | 10 | > th | dose dependent | rect. | 16 | 1 |
| 736 | 144.32 | atmosphere | 1010 | 720 | > th | dose dependent | rect. | 23 | 4 |
| 807 | 144.61 | humidity | 80 | 10 | > th | dose independent | rect. | 15 | 1 |
| 816 | 144.62 | radiation | 1 | 30 | < th | dose dependent | rect. | 4 | 13 |
| 844 | 144.76 | atmosphere | 1015 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 947 | 145.01 | atmosphere | 1015 | 1440 | > th | dose dependent | no | NA | NA |